Latest Highlights
Saliva Publications
GWAS/Cohort Studies
Bulik, Cynthia M., et al. “The Eating Disorders Genetics Initiative (EDGI): study protocol.” BMC psychiatry 21.1 (2021): 1-9. https://doi.org/10.1186/s12888-021-03212-3
Byrne, Enda M., et al. “Cohort profile: the Australian genetics of depression study.” BMJ open 10.5 (2020): e032580. http://dx.doi.org/10.1136/bmjopen-2019-032580
Campos, Adrián I., et al. “Genetic risk for chronic pain is associated with lower antidepressant effectiveness: Converging evidence for a depression subtype.” Australian & New Zealand Journal of Psychiatry (2021): 00048674211031491. https://doi.org/10.1177/00048674211031491
Campos, Adrian I., et al. “Impact of CYP2C19 metaboliser status on SSRI response: a retrospective study of 9500 participants of the Australian Genetics of Depression Study.” The Pharmacogenomics Journal 22.2 (2022): 130-135. https://doi.org/10.1038/s41397-022-00267-7
Davies, Molly R., et al. “The Genetic Links to Anxiety and Depression (GLAD) Study: Online recruitment into the largest recontactable study of depression and anxiety.” Behaviour research and therapy 123 (2019): 103503. https://doi.org/10.1016/j.brat.2019.103503
Devereux-Cooke, Andy, et al. “DecodeME: community recruitment for a large genetics study of myalgic encephalomyelitis/chronic fatigue syndrome.” Bmc neurology 22.1 (2022): 269. https://doi.org/10.1186/s12883-022-02763-6
McEwen, Fiona S., et al. “Cohort profile: biological pathways of risk and resilience in Syrian refugee children (BIOPATH).” Social psychiatry and psychiatric epidemiology 57.4 (2022): 873-883.
https://doi.org/10.1007/s00127-022-02228-8
Monssen, Dina, et al. “The Eating Disorders Genetics Initiative (EDGI) United Kingdom.” medRxiv (2022): 2022-11. https://doi.org/10.1101/2022.11.11.22282083
Gomez, Lina, et al. “Phenotypic and genetic factors associated with donation of DNA and consent to record linkage for prescription history in the Australian Genetics of Depression Study.” European Archives of Psychiatry and Clinical Neuroscience (2022): 1 https://doi.org/10.1007/s00406-022-01527-0
Habota, Tina, et al. “Cohort profile for the STRADL study: A depression-focused investigation of Generation Scotland, using detailed clinical, cognitive, and neuroimaging assessments.” Wellcome Open Research (2021) https://doi.org/10.12688/wellcomeopenres.15538.2
Lacourt, Aude, et al. “ETIOSARC study: environmental aetiology of sarcomas from a French prospective multicentric population-based case–control study—study protocol.” BMJ open 9.6 (2019): e030013. http://dx.doi.org/10.1136/bmjopen-2019-030013
Mitchell, Brittany L., et al. “Polygenic risk scores derived from varying definitions of depression and risk of depression.” JAMA psychiatry 78.10 (2021): 1152-1160. https://doi.org/10.1001/jamapsychiatry.2021.1988
Zatońska, Katarzyna, et al. “population cohort Study of Wroclaw citizens (pictUre)–study protocol.” Journal of Health Inequalities 8.1. https://doi.org/10.5114/jhi.2022.115930
Kreft, Karim L., et al. “Relevance of multiple sclerosis severity genotype in predicting disease course: A real‐world cohort.” Annals of Neurology (2023). https://doi.org/10.1002/ana.26831
Lind, Penelope A., et al. “Preliminary results from the Australian Genetics of Bipolar Disorder Study: A nation-wide cohort.” Australian & New Zealand Journal of Psychiatry 57.11 (2023): 1428-1442. https://doi.org/10.1177/00048674231195571
Monssen, Dina, et al. “The United Kingdom Eating Disorders Genetics Initiative.” International Journal of Eating Disorders (2023). https://doi.org/10.1002/eat.24037
SNP’s/Genotyping
Boshnjaku, Arben, et al. “ACTN3 Genotypes and Their Relationship with Muscle Mass and Function of Kosovan Adults.” International Journal of Environ mental Research and Public Health 18.17 (2021): 9135. https://doi.org/10.3390/ijerph18179135
Bulik, Cynthia M., et al. “The Eating Disorders Genetics Initiative (EDGI): study protocol.” BMC psychiatry 21.1 (2021): 1-9. https://doi.org/10.1186/s12888-021-03212-3
Butler, Tony, et al. “Sertraline hydrochloride for reducing impulsive behaviour in male, repeat-violent offenders (ReINVEST): protocol for a phase IV, double-blind, placebo-controlled, randomised clinical trial.” BMJ open 11.9 (2021): e044656. https://doi.org/10.1136/bmjopen-2020-044656
Campos, Adrian I., et al. “Understanding genetic risk factors for common side effects of antidepressant medications.” Communications Medicine 1.1 (2021): 1-10. https://doi.org/10.1038/s43856-021-00046-8
Garcia, Sara L., et al. “Prediction of nephrotoxicity associated with cisplatin-based chemotherapy in testicular cancer patients.” JNCI cancer spectrum 4.3 (2020): pkaa032. https://doi.org/10.1093/jncics/pkaa032
Graham, Catherine AM, et al. “The association of parental genetic, lifestyle, and social determinants of health with offspring overweight.” Lifestyle genomics 13.2 (2020): 99-106. https://doi.org/10.1159/000505749
Graham, Catherine AM, et al. “Genetic differences in fat taste sensitivity and dietary intake in a UK female cohort.” Food Quality and Preference 92 (2021): 104202. https://doi.org/10.1016/j.foodqual.2021.104202
Grossmann, Leoni, et al. “Generation of integration-free induced pluripotent stem cell lines from four pediatric ADHD patients.” Stem Cell Research 53 (2021): 102268. https://doi.org/10.1016/j.scr.2021.102268
Hall, Elliott CR, et al. “The genetic association with injury risk in male academy soccer players depends on maturity status.” Scandinavian Journal of Medicine & Science in Sports 32.2 (2022): 338-350.
https://doi.org/10.1111/sms.14077
Li, Song, et al. “Pain predict genetics: protocol for a prospective observational study of clinical and genetic factors to predict the development of postoperative pain.” BMJ open 12.11 (2022): e066134. https://doi.org/10.1136/bmjopen-2022-066134
McCallum, Linsay, et al. “Rationale and design of the genotype-blinded trial of torasemide for the treatment of hypertension (BHF UMOD).” American Journal of Hypertension (2020). https://doi.org/10.1093/ajh/hpaa166
Murtagh, Conall F., et al. “The genetic profile of elite youth soccer players and its association with power and speed depends on maturity status.” PloS one 15.6 (2020): e0234458. https://doi.org/10.1371/journal.pone.0234458
Ohki, Cristine Marie Yde, et al. “Generation of integration-free induced pluripotent stem cells from healthy individuals.” Stem Cell Research 53 (2021): 102269. https://doi.org/10.1016/j.scr.2021.102269
Ramesh, S., et al. “Incidence of major adverse cardiovascular events with genotype test guided antiplatelet treatment strategy after percutaneous coronary intervention.” Indian Heart Journal (2020). https://doi.org/10.1016/j.ihj.2020.09.002
Robino, Antonietta, et al. “Combined influence of TAS2R38 genotype and PROP phenotype on the intensity of basic tastes, astringency and pungency in the Italian taste project.” Food Quality and Preference 95 (2022): 104361. https://doi.org/10.1016/j.foodqual.2021.104361
Ruffles, Tom, et al. “Asthma prescribing according to Arg16Gly beta-2 genotype: a randomised trial in adolescents.” European Respiratory Journal (2021). https://doi.org/10.1183/13993003.04107-2020
Sugrue, Jamie A., et al. “Enhanced TLR3 responsiveness in hepatitis C virus resistant women from the Irish anti-D cohort.” Cell Reports Medicine 3.11 (2022): 100804. https://doi.org/10.1016/j.xcrm.2022.100804
Wiley, Laura K., et al. “Building a Vertically-Integrated Genomic Learning Health System: The Colorado Center for Personalized Medicine Biobank.” medRxiv (2022): 2022-06. https://doi.org/10.1101/2022.06.09.22276222
Gomez, Lina, et al.”Phenotypic and genetic factors associated with donation of DNA and consent to record linkage for prescription history in the Australian Genetics of Depression Study.”European Archives of Psychiatry and Clinical Neuroscience 273.6(2023) https://doi.org/10.1007/s00406-022-01527-0
Smeeth, Demelza, et al. “Risk and resilience in Syrian refugee children: a multisystem analysis.” Development and psychopathology (2023): 1-13. https://doi.org/10.1017/S0954579423000433
WM te Loo, D. Maroeska, et al. “Influence of genetic variants on the pharmacokinetics and pharmacodynamics of sirolimus: a systematic review.” Pharmacogenomics 24.11 (2023): 629-639. https://doi.org/10.2217/pgs-2022-0147
Bulik, Cynthia M., et al. “ARFID Genes and Environment (ARFID-GEN): study protocol.” BMC psychiatry 23.1 (2023): 863. https://doi.org/10.1186/s12888-023-05266-x
Ohki, Cristine Marie Yde, et al. “Generation of induced pluripotent stem cells from two ADHD patients and two healthy controls.” Stem Cell Research 69 (2023): 103084. https://doi.org/10.1016/j.scr.2023.103084
Sequencing
Hansen, Marcus Høy, and Charlotte Guldborg Nyvold. “Replicate whole-genome next-generation sequencing data derived from Caucasian donor saliva samples.” Data in Brief 38 (2021): 107349. https://doi.org/10.1016/j.dib.2021.107349
Sato, Mitra S., et al. “Hemizygous mutations in L1CAM in two unrelated male probands with childhood onset psychosis.” Psychiatric genetics 30.3 (2020): 73-82. https://doi.org/10.1097/YPG.0000000000000253
Yu, Miao, et al. “KDF1 Novel Variant Causes Unique Dental and Oral Epithelial Defects.” International Journal of Molecular Sciences 23.20 (2022): 12465. https://doi.org/10.3390/ijms232012465
Cousins, Oliver, et al. “Microglial activation, tau and amyloid deposition in TREM2 p. R47H carriers and mild cognitive impairment patients” Journal of neuroinflammation 20.1 (2023): 272. https://doi.org/10.1186/s12974-023-02945-0
Pais, Ricardo, et al. “Facilitating NGS-Based Screening of Genetic Disorders Using-AI-Driven Bioinformatics.” Medical Sciences Forum. Vol. 22. No. 1. MDPI, 2023. https://doi.org/10.3390/msf2023022039
Thomas, Bjorn R., et al. “Deep palmar phenotyping in atopic eczema: patterns associated with filaggrin variants, disease severity and barrier function in a South Asian population.” British Journal of Dermatology 188.6 (2023): 785-792. https://doi.org/10.1093/bjd/ljad036
Microbiome
Ahrens, Angelica P., et al. “Saliva microbiome, dietary, and genetic markers are associated with suicidal ideation in university students.” Scientific reports 12.1 (2022): 14306. https://doi.org/10.1038/s41598-022-18020-2
Gopinath, Divya, et al. “Salivary bacterial shifts in oral leukoplakia resemble the dysbiotic oral cancer bacteriome.” Journal of oral microbiology 13.1 (2021): 1857998. https://doi.org/10.1080/20002297.2020.1857998
Gopinath, Divya, et al. “Differences in the bacteriome of swab, saliva, and tissue biopsies in oral cancer.” Scientific reports 11.1 (2021): 1-13. https://doi.org/10.1038/s41598-020-80859-0
Lee, Yeon-Hee, Ji-Youn Hong, and Gi-Ja Lee. “Composition and Diversity of Salivary Microbiome Affected by Sample Collection Method.” Journal of Oral Medicine and Pain 47.1 (2022): 10-26. https://doi.org/10.14476/jomp.2022.47.1.10
Roesch, Luiz Fernando W., et al. “PIME: a package for discovery of novel differences among microbial communities.” Molecular ecology resources 20.2 (2020): 415-428. https://doi.org/10.1111/1755-0998.13116
Alyousef, Yousef M., et al. “Oral microbiota analyses of paediatric Saudi population reveals signatures of dental caries.” BMC Oral Health 23.1 (2023): 935. https://doi.org/10.1186/s12903-023-03448-3
Alyousef, Yousef M., et al. “Oral microbiota analyses of Saudi sickle cell anemics with dental caries.” international dental journal 73.1 (2023): 144-150. https://doi.org/10.1016/j.identj.2022.06.017
Epigenetics/Methylation
Ruffell, Simon GD, et al. “Ceremonial Ayahuasca in Amazonian Retreats—Mental Health and Epigenetic Outcomes From a Six-Month Naturalistic Study.” Frontiers in Psychiatry 12 (2021): 898. https://doi.org/10.3389/fpsyt.2021.687615
Zhang, Jun, et al. “Exploring Effect of Postdischarge Developmental Support Program on Preterm Infant Neurodevelopment and BDNF Gene DNA Methylation.” Advances in Neonatal Care (2022): 10-1097. https://doi.org/10.1097/ANC.0000000000001046B
Sandalova, Elena, et al. “Alpha-ketoglutarate supplementation and Biological age in middle-aged adults (ABLE)—intervention study protocol.” GeroScience (2023): 1-11. https://doi.org/10.1007/s11357-023-00813-6
Zhang, Jun, et al. “Exploring Effect of Postdischarge Developmental Support Program on Preterm Infant Neurodevelopment and BDNF Gene DNA Methylation.” Advances in Neonatal Care 23.2 (2023): E50-E58. https://doi.org/10.1097/ANC.0000000000001046
PCR/qPCR/STR/RFLP
Alexis, N. E., et al. “A Validation Study on a Sputum Home Collection Method with Immediate Freezing and Delayed Processing: Impact on Proteomic, Mucin and RNA/DNA Endpoints.” American Thoracic Society, 2022. A1155-A1155. https://www.atsjournals.org/doi/pdf/10.1164/ajrccm-conference.2022.205.1_MeetingAbstracts.A1155
Nikolaou, Elissavet, et al. “Experimental Human Challenge Defines Distinct Pneumococcal Kinetic Profiles and Mucosal Responses between Colonized and Non-Colonized Adults.” Mbio 12.1 (2021). https://doi.org/10.1128/mBio.02020-20.
Potocka, Natalia, et al. “Association of ACTN3 Polymorphism with Body Somatotype and Cardiorespiratory Fitness in Young Healthy Adults.” International journal of environmental research and public health 16.9 (2019): 1489. https://doi.org/10.3390/ijerph16091489
Halling, Anne-Sofie, et al. “Skin TARC/CCL17 increase precedes the development of childhood atopic dermatitis.” Journal of Allergy and Clinical Immunology 151.6 (2023): 1550-1557. https://doi.org/10.1016/j.jaci.2022.11.023
de Jong, Erik AC, et al. “Developmental Validation of the IDseek® OmniSTR™ Global autosomal STR profiling kit.” https://www.nimagen.com/gfx/Forensics/Resources/Publications/Developmental_Validation_of_the_IDseek_OmniSTR_Global_Autosomal_STR_profiling_kit_V7.pdf
Middleton, Bianca F., et al. “Histo-blood group antigen profile of Australian Aboriginal children and seropositivity following oral rotavirus vaccination.” Vaccine 41.24 (2023): 3579-3583. https://doi.org/10.1016/j.vaccine.2023.05.007
Potocka, Natalia, et al. “Effects of the Trp64Arg Polymorphism in the ADRB3 Gene on Body Composition, Cardiorespiratory Fitness, and Physical Activity in Healthy Adults.” Genes 14.8 (2023): 1541. https://doi.org/10.3390/genes14081541
Mitochondrial DNA
Winful, Taiye, et al. “Exploring the legacy of African and Indigenous Caribbean admixture in Puerto Rico.” American Journal of Biological Anthropology 182.2 (2023): 194-209. https://doi.org/10.1002/ajpa.24814
COVID-19
Carter, Nikki, et al. “A novel automated SARS-CoV-2 saliva PCR test protects a global asymptomatic workforce.” Scientific Reports 11.1 (2021): 1-6. https://doi.org/10.1038/s41598-021-92070-w
Hardt, Melina, et al. “Pre-analytical sample stabilization by different sampling devices for PCR-based COVID-19 diagnostics.” New Biotechnology 70 (2022): 19-27. https://doi.org/10.1016/j.nbt.2022.04.001Paju, Susanna, et al. “Effect of RNA quality to SARS-CoV-2 RT-qPCR detection from saliva.” Journal of Medical Microbiology 71.4 (2022): 001507. https://doi.org/10.1099/jmm.0.001507
Thabit, Alif Adlan Mohd, et al. “Diagnostic accuracy of fresh drooled saliva for SARS-CoV-2 in travelers.” Travel medicine and infectious disease 43 (2021): 102144. https://doi.org/10.1016/j.tmaid.2021.102144
Thomas, Amy C., et al. “Evaluation and deployment of isotype-specific salivary antibody assays for detecting previous SARS-CoV-2 infection in children and adults.” Communications Medicine 3.1 (2023): 37. https://doi.org/10.1038/s43856-023-00264-2
Swab Publications
GWAS/Cohort Studies
Bankvall, Maria, et al. “A family‐based genome‐wide association study of recurrent aphthous stomatitis.” Oral Diseases 26.8 (2020): 1696-1705. https://doi.org/10.1111/odi.13490
Bernardi J.R., Ferreira C.F., Nunes M., da Silva C.H., Bosa V.L., Silveira P.P., and Goldani M.Z. (2012) Impact of perinatal different intrauterine environments on child growth and development in the first six months of life-IVAPSA birth cohort: Rationale, design, and methods. BMC Pregnancy and Childbirth 12: 25. https://doi.org/10.1186/1471-2393-12-25
Hourihane, Jonathan, et al. “Early initiation of short-term emollient use for the prevention of atopic dermatitis in high risk infants–the STOP AD randomised controlled trial.” Authorea Preprints (2022). https://doi.org/10.22541/au.164940311.12725370/v1
Jabbar-Lopez ZK, Gurung N, Greenblatt D, et al. Protocol for an outcome assessor-blinded pilot randomised controlled trial of an ion-exchange water softener for the prevention of atopic eczema in neonates, with an embedded mechanistic study: the Softened Water for Eczema Prevention (SOFTER) trial. BMJ Open 2019;9:e027168. https://doi.org/10.1136/bmjopen-2018-027168
Kvist, Tuomas, et al. “Cohort profile: Cohort profile: InTraUterine sampling in early pregnancy (ITU), a prospective pregnancy cohort study in Finland: study design and baseline characteristics.” BMJ Open 12.1 (2022). https://doi.org/10.1136/bmjopen-2021-049231
Marsaux, C.F., Celis-Morales, C., Fallaize, R., Macready, A.L., Kolossa, S., Woolhead, C., et al. (2015) Effects of a Web-Based Personalized Intervention on Physical Activity in European Adults: A Randomized Controlled Trial. Journal of medical Internet research 17: e231. https://doi.org/10.2196/jmir.4660
Wienholtz, Nita Katarina Frifelt, et al. “Cohort profile: COpenhagen ROsacea COhort (COROCO) and COpenhagen MIgraine COhort (COMICO).” BMJ open 10.8 (2020): e039445. https://doi.org/10.1136/bmjopen-2020-039445
Koellinger, Philipp D., et al. “Cohort profile: Genetic data in the German Socio-Economic Panel Innovation Sample (SOEP-G).” Plos one 18.11 (2023): e0294896. https://doi.org/10.1371/journal.pone.0294896
SNP’s/Genotyping
Almomani B., Hawwa A.F., Millership J.S., Heaney L., Douglas I., McElnay J.C., and Shields M.D. (2013) Can certain genotypes predispose to poor asthma control in children? A pharmacogenetic study of 9 candidate genes in children with difficult asthma. PloS One 8: e60592. https://doi.org/10.1371/journal.pone.0060592
Ammerdorffer, Anne, et al. “Genetic variation in TLR10 is not associated with chronic Q fever, despite the inhibitory effect of TLR10 on Coxiella burnetii-induced cytokines in vitro.” Cytokine 77 (2016): 196-202 https://doi.org/10.1016/j.cyto.2015.09.005
Andersson, Anna Maria, et al. “Assessment of biomarkers in pediatric atopic dermatitis by tape strips and skin biopsies.” Allergy (2021) https://doi.org/10.1111/all.15153
Bakeberg, Megan C., et al. “The TOMM40 ‘523’polymorphism in disease risk and age of symptom onset in two independent cohorts of Parkinson’s disease.” Scientific reports 11.1 (2021): 1-9. https://doi.org/10.1038/s41598-021-85510-0
Bartik, Zsuzsa, et al. “A genome‑wide scan to locate regions associated with familial vesicoureteral reflux.” Experimental and Therapeutic Medicine 23.1 (2022): 1-12. https://doi.org/10.3892/etm.2021.11015
Bhatt, Ishan Sunilkumar, et al. “Association Analysis of Candidate Gene Polymorphisms and Audiometric Measures of Noise-Induced Hearing Loss in Young Musicians.” Otology & neurotology: official publication of the American Otological Society, American Neurotology Society [and] European Academy of Otology and Neurotology 41.5 (2020): e538. https://doi.org/10.1097/MAO.0000000000002615
Bowler F.R., Reid P.A., Boyd A.C., Diaz-Mochon J.J., and Bradley M. (2011) Dynamic chemistry for enzyme-free allele discrimination in genotyping by MALDI-TOF mass spectrometry. Analytical Methods 3: 1656-1663. https://doi.org/10.1039/c1ay05176h
Buijs, S. B., et al. “Single nucleotide polymorphism (SNP) rs3751143 in P2RX7 is associated with therapy failure in chronic Q fever while rs7125062 in MMP1 is associated with fewer complications.” Clinical Microbiology and Infection (2020). https://doi.org/10.1016/j.cmi.2020.06.016
Capalbo, Antonio, et al. “Artificial oocyte activation with calcium ionophore does not cause a widespread increase in chromosome segregation errors in the second meiotic division of the oocyte.” Fertility and sterility 105.3 (2016): 807-814. https://doi.org/10.1016/j.fertnstert.2015.11.017
Celis-Morales, C., Livingstone, K.M., Marsaux, C.F., Forster, H., O’Donovan, C.B., Woolhead, C., et al. (2015) Design and baseline characteristics of the Food4Me study: a web-based randomised controlled trial of personalised nutrition in seven European countries. Genes & Nutrit 10: 1-13. http://dx.doi.org/10.1007/s12263-014-0450-2
Celis-Morales, C., Livingstone, K.M., Woolhead, C., Forster, H., O’Donovan, C.B., Macready, A.L., et al. (2015) How reliable is internet-based self-reported identity, socio-demographic and obesity measures in European adults? Genes & Nutrit 10: 1-10. https://doi.org/10.1007/s12263-015-0476-0
Celis‐Morales, Carlos, et al. “Physical activity attenuates the effect of the FTO genotype on obesity traits in European adults: the Food4Me study.” Obesity 24.4 (2016): 962-969. https://doi.org/10.1002/oby.21422
Centanni, T., Green, J.R., Iuzzini-Seigel, J., Bartlett, C.W., and Hogan, T.P. (2015) Evidence for the multiple hits genetic theory for inherited language impairment: a case study. Front Genet 6: 272. https://doi.org/10.3389/fgene.2015.00272
Centanni, T., Sanmann, J., Green, J., Iuzzini‐Seigel, J., Bartlett, C., Sanger, W., and Hogan, T. (2015) The role of candidate‐gene CNTNAP2 in childhood apraxia of speech and specific language impairment. Am. J. Med. Genet 168: 536-543. https://doi.org/10.1002/ajmg.b.32325
Chaoimh, Carol Ní, et al. “Early initiation of short‐term emollient use for the prevention of atopic dermatitis in high‐risk infants—The STOP‐AD randomised controlled trial.” Allergy (2022). https://doi.org/10.1111/all.15491
Chiu, Christine L., Nerissa L. Hearn, and Joanne M. Lind. “Development of a Risk Score for Extraintestinal Manifestations of Coeliac Disease.” Medicine 95.15 (2016). https://doi.org/10.1097/MD.0000000000003286
Cimino, Silvia, et al. “The μ‐opioid receptor gene A118G polymorphism is associated with insecure attachment in children with disruptive mood regulation disorder and their mothers.” Brain and behavior 10.7 (2020): e01659. https://doi.org/10.1002/brb3.1659
Colbert, Lauren E., et al. “Expansion of Candidate HPV-Specific T Cells in the Tumor Microenvironment during Chemoradiotherapy Is Prognostic in HPV16+ Cancers.” Cancer immunology research 10.2 (2022): 259-271. http://doi.org/10.1158/2326-6066.CIR-21-0119
Concas, Maria Pina, et al. “Genetic variations associated with the soapy flavor perception in Gorgonzola PDO cheese.” Food Quality and Preference 99 (2022): 104569. https://doi.org/10.1016/j.foodqual.2022.104569
Fallaize, Rosalind, et al. “The effect of the apolipoprotein E genotype on response to personalized dietary advice intervention: findings from the Food4Me randomized controlled trial.” The American journal of clinical nutrition 104.3 (2016): 827-836. https://doi.org/10.3945/ajcn.116.135012
Fishe, Jennifer N., et al. “Methods and implementation of a pediatric asthma pharmacogenomic study in the emergency department setting.” Pharmacogenetics and Genomics 30.9 (2020): 201-207. https://doi.org/10.31487/j.JDOA.2020.02.04
Fishe, Jennifer N., et al. “SNPs in PRKG1 & SPATA13-AS1 are associated with bronchodilator response: a pilot study during acute asthma exacerbations in African American children.” Pharmacogenetics and Genomics 31.7 (2021): 146-154. https://doi.org/10.1097/FPC.0000000000000434
Gerner, Trine, et al. “‘Barrier dysfunction in Atopic newBorns studY’(BABY): protocol of a Danish prospective birth cohort study.” BMJ open 10.7 (2020): e033801. http://dx.doi.org/10.1136/bmjopen-2019-033801
Gerner, Trine, et al. “Differences in Occurrence, Risk Factors and Severity of Early-onset Atopic Dermatitis among Preterm and Term Children.” Acta Dermato-Venereologica 102 (2022): adv00737-adv00737. http:// https://doi.org/10.2340/actadv.v102.575
Gielis, Els M., et al. “The use of plasma donor-derived, cell-free DNA to monitor acute rejection after kidney transplantation.” Nephrology Dialysis Transplantation 35.4 (2020): 714-721. https://doi.org/10.1093/ndt/gfz091
Gilbert-Diamond, Diane, et al. “Television food advertisement exposure and FTO rs9939609 genotype in relation to excess consumption in children.” International journal of obesity 41.1 (2017): 23-29. https://doi.org/10.1038/ijo.2016.163
Gorecki, Anastazja M., et al. “Single nucleotide polymorphisms associated with gut homeostasis influence risk and age-at-onset of Parkinson’s disease.” Frontiers in Aging Neuroscience 12 (2020). https://doi.org/10.3389/fnagi.2020.603849
Gosadi, I.M., Goyder, E.C., and Teare, M.D. (2014) Investigating the potential effect of consanguinity on type 2 diabetes susceptibility in a Saudi population. Hum Hered 77: 197-206. https://doi.org/10.1159/000362447
Grgic, Jozo, et al. “ADOR2A C allele carriers exhibit ergogenic responses to caffeine supplementation.” Nutrients 12.3 (2020): 741. https://doi.org/10.3390/nu12030741
Grgic, Jozo, et al. “CYP1A2 genotype and acute effects of caffeine on resistance exercise, jumping, and sprinting performance.” Journal of the International Society of Sports Nutrition 17 (2020): 1-11. https://doi.org/10.1186/s12970-020-00349-6
Harker, M., Carvell, A., Marti, V.P., Riazanskaia, S., Kelso, H., Taylor, D., et al.(2014) Functional characterisation of a SNP in the ABCC11 allele—effects on axillary skin metabolism, odour generation and associated behaviours. J Dermatol Sci 73: 23-30. https://doi.org/10.1016/j.jdermsci.2013.08.016
Huang, Wei-Hsin, et al. “Study of seven single-nucleotide polymorphisms identified in East Asians for association with obesity in a Taiwanese population.” BMJ open 6.8 (2016): e011713. http://dx.doi.org/10.1136/bmjopen-2016-011713
Ibiyemi, Olushola, et al. “Single Nucleotide Polymorphisms in COL1A2 gene and dental fluorosis among 4-and 8-year old Nigerian children.” Journal of Dentistry (2020). https://doi.org/10.31487/j.JDOA.2020.02.04
Jacob, Ysabel, et al. “ACTN3 (R577X) genotype is associated with Australian football league players.” Journal of strength and conditioning research 36.2 (2022): 573-576. https://doi.org/10.1519/JSC.0000000000003458
Jenkins, Luke C., et al. “Cortical function and sensorimotor plasticity are prognostic factors associated with future low back pain after an acute episode: the UPWaRD prospective cohort study.” Pain (2022): 10-1097.
https://doi.org/10.1097/j.pain.0000000000002684
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Startin, C.M., Fiorentini, C., de Haan, M., and Skuse, D.H. (2015) Variation in the X-Linked EFHC2 Gene Is Associated with Social Cognitive Abilities in Males. PLoS One 10: e0131604. https://doi.org/10.1371/journal.pone.0131604
Tenhu, Elina, et al. “Gene Polymorphisms of TLR4 and TLR9 and Haemophilus influenzae Meningitis in Angolan Children.” Genes 11.9 (2020): 1099. https://doi.org/10.3390/genes11091099
Tovar, Alison, et al. “An FTO Gene Variant Moderates the Association between Parental Restriction and Child BMI.” PloS one 11.5 (2016): e0155521. https://doi.org/10.1371/journal.pone.0155521
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Sequencing
Andrianova, Maria A., et al. “Extended family with germline pathogenic variant in polymerase delta provides strong evidence for recessive effect of proofreading inactivation.” bioRxiv (2022): 2022-07. https://doi.org/10.1101/2022.07.20.500591
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Aguilera-Diaz, Almudena, et al. “Strategy for identification of a potential inherited leukemia predisposition in a 299 patient’s cohort with tumor-only sequencing data.” Leukemia Research 95 (2020): 106386. https://doi.org/10.1016/j.leukres.2020.106386
Bartik, Zsuzsa I., et al. “Whole exome sequencing identifies KIF26B, LIFR and LAMC1 mutations in familial vesicoureteral reflux.” Plos one 17.11 (2022): e0277524. https://doi.org/10.1371/journal.pone.0277524
Bernardi, Simona, et al. “ETV6: A candidate gene for predisposition to “Blend Pedigrees”? A case report from the NEXT-famly clinical trial.” Case reports in hematology 2020 (2020). https://doi.org/10.1155/2020/2795656
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Pham, Kala T., Tatiana Cisneros Napravnik, and Ann H. Klopp. “HPV-Reactive T-Cell Receptor Expand in Combination Therapy.” (2022). https://openworks.mdanderson.org/cgi/viewcontent.cgi?article=1001&context=sumexp22
Polcari, I., Becker, L., Stein, S. L., Smith, M. S., & Paller, A. S. (2014). Filaggrin Gene Mutations in African Americans with Both Ichthyosis Vulgaris and Atopic Dermatitis. Pediatric dermatology 31 (4): 489-492. https://doi.org/10.1111/pde.12355
Porter T.R., Li X., Stephensen C.B., Mulligan K., Rutledge B., Flynn P.M., et al.(2013) Genetic associations with 25-hydroxyvitamin D deficiency in HIV-1-infected youth: Fine-mapping for the GC/DBP gene that encodes the vitamin D-binding protein. Frontiers in Genetics 4: 234. https://doi.org/10.3389/fgene.2013.00234
Schmidt B.L., Kuczynski, J., Bhattacharya A., Huey B. Corby, P. M. Queiroz, et al.(2014). Changes in Abundance of Oral Microbiota Associated with Oral Cancer. PLoS One, 9(6): e98741. https://doi.org/10.1371/journal.pone.0098741
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Serra, Eva Gonçalves, et al. “Somatic mosaicism and common genetic variation contribute to the risk of very-early-onset inflammatory bowel disease.” Nature communications 11.1 (2020): 1-15. https://doi.org/10.1038/s41467-019-14275-y
Simon C., Chagraoui J., Krosl J., Gendron P., Wilhelm B., Lemieux S., et al.(2012) A key role for EZH2 and associated genes in mouse and human adult T-cell acute leukemia. Genes Dev 26: 651-656.
Smith K.E., Porges E.C., Norman G.J., Connelly J.J., and Decety J. (2014) Oxytocin receptor gene variation predicts empathic concern and autonomic arousal while perceiving harm to others. Social Neuroscience 9: 1-9. https://doi.org/10.1080/17470919.2013.863223
Stephensen C.B., Armstrong P., Newman J.W., Pedersen T.L., Legault J., Schuster G.U., et al. (2011) ALOX5 gene variants affect eicosanoid production and response to fish oil supplementation. J Lipid Res 52: 991-1003. https://doi.org/10.1194/jlr.P012864
Timberlake, Andrew T., et al. “Two locus inheritance of non-syndromic midline craniosynostosis via rare SMAD6 and common BMP2 alleles.” Elife 5 (2016): e20125 https://doi.org/10.7554/eLife.20125
Topka, S., Vijai, J., Walsh, M.F., Jacobs, L., Maria, A., Villano, D., et al. (2015) Germline ETV6 mutations confer susceptibility to acute lymphoblastic leukemia and thrombocytopenia. PLoS Gen 11: e1005262. https://doi.org/10.1371/journal.pgen.1005262
Yin, Le, et al. “Novel germline mutation KMT2A G3131S confers genetic susceptibility to familial myeloproliferative neoplasms.” Annals of Hematology 100.9 (2021): 2229-2240. https://doi.org/10.1007/s00277-021-04562-4
Chu, Annie TW, et al. “The Hong Kong genome project: building genome sequencing capacity and capability for advancing genomic science in Hong Kong.” J Transl Genet Genom 2023;7:196-212 https://doi.org/10.20517/jtgg.2023.22
Ciucani, Marta Maria, et al. “The extinct Sicilian wolf shows a complex history of isolation and admixture with ancient dogs.” Iscience 26.8 (2023). https://doi.org/10.1016/j.isci.2023.107307
Colbert, Lauren E., et al. “Tumor-resident Lactobacillus iners confer chemoradiation resistance through lactate-induced metabolic rewiring.” Cancer cell 41.11 (2023): 1945-1962. https://doi.org/10.1016/j.ccell.2023.09.012
Dicks, Kara L., et al. “Genetic diversity in global populations of the critically endangered addax (Addax nasomaculatus) and its implications for conservation.” Evolutionary Applications 16.1 (2023): 111-125. https://doi.org/10.1111/eva.13515
Harrison, Matthew, et al. “A Comparison of Non-Destructive Visceral Swab and Tissue Biopsy Sampling Methods for Genotyping-by-Sequencing in the Freshwater Mussel Fusconaia askewi.” Genes 14.6 (2023): 1197. https://doi.org/10.3390/genes14061197
Koutsokali, Maria, Christina Dianni, and Michael Valahas. “Buccal swabs as an effective alternative to traditional tissue sampling methods for DNA analyses in Chamaeleonidae.” Wildlife Biology 2023.2 (2023): e01052. https://doi.org/10.1002/wlb3.01052
Kundishora, Adam J., et al. “Multiomic analyses implicate a neurodevelopmental program in the pathogenesis of cerebral arachnoid cysts.” Nature medicine 29.3 (2023): 667-678. https://doi.org/10.1038/s41591-023-02238-2
Manzar, Gohar S., et al. “Exploratory analysis of the cervix tumoral HPV antigen-specific T-cell repertoire during chemoradiation and after brachytherapy.” Brachytherapy (2023). https://doi.org/10.1016/j.brachy.2023.10.007
Olivera‐Hyde, Miluska, Jess W. Jones, and Eric M. Hallerman. “Phylogenetic assessment of endangered and look‐alike Pigtoe species in a freshwater mussel diversity hotspot.” Ecology and Evolution 13.1 (2023): e9717. https://doi.org/10.1002/ece3.9717
Singh, Amrita K., et al. “A novel SMARCC1 BAFopathy implicates neural progenitor epigenetic dysregulation in human hydrocephalus.” Brain (2023): awad405. https://doi.org/10.1093/brain/awad405
Stefańska, Katarzyna, et al. “High maternal-fetal HLA eplet compatibility is associated with severe manifestation of preeclampsia.” Frontiers in Immunology 14 (2023). https://doi.org/10.3389/fimmu.2023.1272021
Whelan, Nathan V., et al. “Hidden in the hills: phylogeny of the freshwater mussel genus Alasmidonta (Bivalvia: Unionidae) and description of a new species.” Zoological Journal of the Linnean Society 198.2 (2023): 650-676. https://doi.org/10.1093/zoolinnean/zlac106
RNA/Gene Expression
Archer, Nicholas Steven, et al. “A comparison of collection techniques for gene expression analysis of human oral taste tissue.” PloS one 11.3 (2016): e0152157. https://doi.org/10.1371/journal.pone.0152157
Robino, Antonietta, et al. “Taste perception and expression in stomach of bitter taste receptor tas2r38 in obese and lean subjects.” Appetite 166 (2021): 105595. https://doi.org/10.1016/j.appet.2021.105595
Microbiome
Adams E.R., Gomez M.A., Scheske L., Rios R., Marquez, R., Cossio, A., et al. (2014). Sensitive diagnosis of cutaneous leishmaniasis by lesion swab sampling coupled to qPCR. Parasitology 141:1891-1897. https://doi.org/10.1017/S0031182014001280
Al Bataineh, Mohammad Tahseen, et al. “Revealing oral microbiota composition and functionality associated with heavy cigarette smoking.” Journal of translational medicine 18.1 (2020): 1-10. https://doi.org/10.1186/s12967-020-02579-3
Al Bataineh, Mohammad Tahseen, et al. “Altered composition of the oral microbiota in depression among cigarette smokers: A pilot study.” Frontiers in Psychiatry 13 (2022). https://doi.org/10.3389/fpsyt.2022.902433
Bahig, Houda, et al. “Longitudinal characterization of the tumoral microbiome during radiotherapy in HPV-associated oropharynx cancer.” Clinical and translational radiation oncology 26 (2021): 98-103. https://doi.org/10.1016/j.ctro.2020.11.007
Bankvall, M., Sjöberg, F., Gale, G., Wold, A., Jontell, M., and Östman, S. (2014) The oral microbiota of patients with recurrent aphthous stomatitis. J Oral Microb6: 10. https://doi.org/10.3402/jom.v6.25739
Biegert, Greyson, et al. “Diversity and composition of gut microbiome of cervical cancer patients: Do results of 16S rRNA sequencing and whole genome sequencing approaches align?.” Journal of Microbiological Methods 185 (2021): 106213. https://doi.org/10.1016/j.mimet.2021.106213
Brzychcy, Karolina, et al. “Gut microbiota in alopecia areata.” Advances in Dermatology and Allergology/Postępy Dermatologii i Alergologii 39.6 (2022): 1162-1170. https://doi.org/10.5114/ada.2022.120453
Charalambous, Eleftheria G., et al. “Early-Life Adversity Leaves Its Imprint on the Oral Microbiome for More Than 20 Years and Is Associated with Long-Term Immune Changes.” International Journal of Molecular Sciences 22.23 (2021): 12682. https://doi.org/10.3390/ijms222312682
Chang, Chih-Chiun J., et al. “Topical glaucoma therapy is associated with alterations of the ocular surface microbiome.” Investigative Ophthalmology & Visual Science 63.9 (2022): 32-32. https://doi.org/10.1167/iovs.63.9.32
Coker, Modupe O., et al. “Dental caries and its association with the oral microbiomes and HIV in young children—Nigeria (DOMHaIN): a cohort study.” BMC oral health 21.1 (2021): 1-15. https://doi.org/10.1186/s12903-021-01944-y
Colbert, Lauren E., et al. “Cancer-associated Lactobacillus iners are genetically distinct and associated with chemoradiation resistance in cervical cancer.” medRxiv (2022): 2022-04. https://doi.org/10.1101/2022.04.26.22274346
Conte, Ianina, et al. “A comparison of community based preventative services to improve child dental health.” NIHR Open Res 2.8 (2022): 8. https://doi.org/10.3310/nihropenres.1115174.1
Danko, David, et al. “A global metagenomic map of urban microbiomes and antimicrobial resistance.” Cell (2021). https://doi.org/10.1016/j.cell.2021.05.002
Divya, Gopinath, et al. “Differences in the bacteriome of swab, saliva, and tissue biopsies in oral cancer.” Scientific Reports (Nature Publisher Group) 11.1 (2021). https://doi.org/10.1038/s41598-020-80859-0
El Alam, Molly B., et al. “A prospective study of the adaptive changes in the gut microbiome during standard-of-care chemoradiotherapy for gynecologic cancers.” PloS one 16.3 (2021): e0247905. https://doi.org/10.1371/journal.pone.0247905
Fabian Cieplik, Egija Zaura, Bernd W. Brandt, Mark J. Buijs, Wolfgang Buchalla, Wim Crielaard, Marja L. Laine, Dong Mei Deng & Rob A. M. Exterkate (2019) Microcosm biofilms cultured from different oral niches in periodontitis patients, Journal of Oral Microbiology, 11:1 https://doi.org/10.1080/20022727.2018.1551596
Gopinath, Divya, et al. “Compositional profile of mucosal bacteriome of smokers and smokeless tobacco users.” Clinical Oral Investigations (2021): 1-10. https://doi.org/10.1007/s00784-021-04137-7
Grant-Beurmann, Silvia, et al. “Dynamics of the infant gut microbiota in the first 18 months of life: the impact of maternal HIV infection and breastfeeding.” Microbiome 10.1 (2022): 61. https://doi.org/10.1186/s40168-022-01230-1
Guevarra, Robin B., et al. “Metagenomic characterization of bacterial community and antibiotic resistance genes found in the mass transit system in Seoul, South Korea.” Ecotoxicology and Environmental Safety 246 (2022): 114176. https://doi.org/10.1016/j.ecoenv.2022.114176
Hernández, Miguel, et al. “Microbiology of molar–incisor hypomineralization lesions. A pilot study.” Journal of Oral Microbiology 12.1 (2020): 1766166. https://doi.org/10.1080/20002297.2020.1766166
HERNÁNDEZ, MIGUEL, Miguel Carda, and Alex Mira. “Comparative pilot study on the qualitative differences in dental biofilm between teeth with molar-incisor hypomineralization and their healthy counterparts.” ODONTOL PEDIÁTR 28.3 (2020): 133-142. https://dialnet.unirioja.es/servlet/articulo?codigo=7705129
Kaiser, Hannah, et al. “Multiscale biology of cardiovascular risk in psoriasis: Protocol for a case-control study.” JMIR research protocols 10.9 (2021): e28669. https://doi.org/10.2196/28669
Kalyan, S., Wang, J., Quabius, E.S., Huck, J., Wiltfang, J., Baines, J.F., and Kabelitz, D. (2015) Systemic immunity shapes the oral microbiome and susceptibility to bisphosphonate-associated osteonecrosis of the jaw. J Transl Med 13:212-015-0568-z. https://doi.org/10.1186/s12967-015-0568-z
Karpinets, Tatiana V., et al. “Metagenomes of rectal swabs in larger, advanced stage cervical cancers have enhanced mucus degrading functionalities and distinct taxonomic structure.” BMC cancer 22.1 (2022): 945. https://doi.org/10.1186/s12885-022-09997-0
Kaspar, U., Kriegeskorte, A., Schubert, T., Peters, G., Rudack, C., Pieper, D.H., et al. (2015) The Culturome of the Human Nose Habitats Reveals Individual Bacterial Fingerprint Patterns. Environ Microbiol (in press). https://doi.org/10.1111/1462-2920.12891
Kim, Jeongwon, Sang Jun Han, and Keunje Yoo. “Dust-Associated Bacterial and Fungal Communities in Indoor Multiple-Use and Public Transportation Facilities.” Atmosphere 13.9 (2022): 1373. https://doi.org/10.3390/atmos13091373
Kim, Ji Heui, et al. “Association between the sinus microbiota with eosinophilic inflammation and prognosis in chronic rhinosinusitis with nasal polyps.” Experimental & molecular medicine 52.6 (2020): 978-987. https://doi.org/10.1038/s12276-020-0458-1
Lin, Daniel, et al. “Microbiome Dynamics During Chemoradiation Therapy for Anal Cancer.” International Journal of Radiation Oncology* Biology* Physics (2022). https://doi.org/10.1016/j.ijrobp.2022.04.037
Lin, Dongjia, et al. “The niche-specialist and age-related oral microbial ecosystem: crosstalk with host immune cells in homeostasis.” Microbial Genomics 8.6 (2022): 000811. https://doi.org/10.1099/mgen.0.000811
López-Santacruz, Hiram D., et al. “Streptococcus dentisani is a common inhabitant of the oral microbiota worldwide and is found at higher levels in caries-free individuals.” International Microbiology 24.4 (2021): 619-629. https://doi.org/10.1007/s10123-021-00222-9
Low, Liying, et al. “Evaluation of full-length nanopore 16S sequencing for detection of pathogens in microbial keratitis.” PeerJ 9 (2021): e10778. https://doi.org/10.7717/peerj.10778
Magiopoulos, I., et al. “A multi-parametric assessment of decontamination protocols for the subglacial Lake Ellsworth probe.” Journal of microbiological methods 123 (2016): 87-93. https://doi.org/10.1016/j.mimet.2016.02.012
McFrederick, Quinn S., et al. “Flowers and Wild Megachilid Bees Share Microbes.” Microbial Ecology 73.1 (2017): 188-200. https://doi.org/10.1007/s00248-016-0838-1
McQuillan, Jonathan S., et al. “Buzz off! An evaluation of ultrasonic acoustic vibration for the disruption of marine micro‐organisms on sensor‐housing materials.” Letters in applied microbiology 63.6 (2016): 393-399. https://doi.org/10.1111/lam.12671
Mitra, Aparna, et al. “Microbial diversity and composition is associated with patient-reported toxicity during chemoradiation therapy for cervical cancer.” International Journal of Radiation Oncology* Biology* Physics 107.1 (2020): 163-171. https://doi.org/10.1016/j.ijrobp.2019.12.040
Neckovic, Ana, et al. “Investigation of direct and indirect transfer of microbiomes between individuals.” Forensic Science International: Genetics 45 (2020): 102212. https://doi.org/10.1016/j.fsigen.2019.102212
Ninomiya, Kazunori, et al. “Effect of Systemic Administration of Amitriptyline on Oral Microbes in Rats.” in vivo 36.5 (2022): 2134-2142. https://doi.org/10.21873/invivo.12939
Older, Caitlin E., Diesel, Alison B., Lawhon, Sara D., Queiroz, Cintia R. R., Henker, Luan C., Rodrigues Hoffmann, Aline. “The feline cutaneous and oral microbiota are influenced by breed and environment https://doi.org/10.1371/journal.pone.0220463
Ortiz, Katlyn, Jess W. Jones, and Eric M. Hallerman. “Development and Characterization of Microsatellite Loci in the Endangered Catspaw, Epioblasma Obliquata (Bivalvia: Unionidae).” Freshwater Mollusk Biology and Conservation 25.1 (2022): 1-6. https://doi.org/10.31931/fmbc-d-21-00002
Paudel, Durga, et al. “Proteomic and microbiota analyses of the oral cavity during psychological stress.” Plos one 17.5 (2022): e0268155. https://doi.org/10.1371/journal.pone.0268155
Pearce, D. A., et al. “Microbiology: lessons from a first attempt at Lake Ellsworth.” Philosophical transactions. Series A, Mathematical, physical, and engineering sciences 374.2059 (2016). https://doi.org/10.1098/rsta.2014.0291
Rautava, J., Pinnell, L.J., Vong, L., Akseer, N., Assa, A., and Sherman, P.M. (2015) Oral microbiome composition changes in mouse models of colitis. J Gastroenterol Hepatol 30:521-527. https://doi.org/10.1111/jgh.12713
Saifon, Woraseth, et al. “Gastrointestinal microbiota profile and clinical correlations in advanced EGFR-WT and EGFR-mutant non-small cell lung cancer.” BMC cancer 22.1 (2022): 1-15. https://doi.org/10.1186/s12885-022-10050-3
Schmidt, B.L., Kuczynski, J., Bhattacharya, A., Huey, B., Corby, P.M., Queiroz, E.L., et al. (2014) Changes in abundance of oral microbiota associated with oral cancer. PlosOne 9 (6): e98741. https://doi.org/10.1371/journal.pone.0098741
Shivaji, Sisinthy, et al. “Alterations in the conjunctival surface bacterial microbiome in bacterial keratitis patients.” Experimental Eye Research 203 (2021): 108418. https://doi.org/10.1016/j.exer.2020.108418
Siegal, Nora, et al. “Elevated levels of Merkel cell polyoma virus in the anophthalmic conjunctiva.” Scientific Reports 11.1 (2021): 1-9. https://doi.org/10.1038/s41598-021-92642-w
Sims, Travis T., et al. “Tumor microbial diversity and compositional differences among women in Botswana with high-grade cervical dysplasia and cervical cancer.” International Journal of Gynecologic Cancer 30.8 (2020). http://dx.doi.org/10.1136/ijgc-2020-001547
Sims, Travis T., et al. “Gut microbiome diversity is an independent predictor of survival in cervical cancer patients receiving chemoradiation.” Communications biology 4.1 (2021): 1-10. https://doi.org/10.1038/s42003-021-01741-x
Somineni, Hari K., et al. “Site-and Taxa-Specific Disease-Associated Oral Microbial Structures Distinguish Inflammatory Bowel Diseases.” Inflammatory Bowel Diseases (2021). https://doi.org/10.1093/ibd/izab082
Sotozono, Maki, et al. “Impact of sleep on the microbiome of oral biofilms.” Plos one 16.12 (2021): e0259850. https://doi.org/10.1371/journal.pone.0259850
Su, Shih-Chi, et al. “Oral microbial dysbiosis and its performance in predicting oral cancer.” Carcinogenesis (2020). https://doi.org/10.1093/carcin/bgaa062
Vidović, B., et al. “The effect of the octenidine-based oral antiseptic on the structure of microbial communities and periodontal status in patients with fixed orthodontic treatments.” European Review for Medical and Pharmacological Sciences 23 (2019): 8598-8605. https://doi.org/10.26355/eurrev_201910_19176
Effelsberg, Natalie, et al. “Pilot study on nasal microbiota dynamics and MRSA carriage of a pig cohort housed on straw bedding.” Molecular Microbiology (2023). https://doi.org/10.1111/mmi.15136
Elnaggar, Jacob H., et al. “HPV-related anal cancer is associated with changes in the anorectal microbiome during cancer development.” Frontiers in immunology 14 (2023): 1051431. https://doi.org/10.3389/fimmu.2023.1051431
Gadoin, Elsa, et al. “Fishing for the microbiome of tropical tuna.” Microbial ecology 86.1 (2023): 742-755. https://10.1007/s00248-022-02096-4
Gafen, Hannah B., et al. “Alterations to the bovine bacterial ocular surface microbiome in the context of infectious bovine keratoconjunctivitis.” Animal Microbiome 5.1 (2023): 60. https://doi.org/10.1186/s42523-023-00282-4
Gafen, Hannah B., et al. “Relative and Quantitative Characterization of the Bovine Bacterial Ocular Surface Microbiome in the Context of Suspected Ocular Squamous Cell Carcinoma.” Animals 13.12 (2023): 1976. https://doi.org/10.3390/ani13121976
Harder, Inken, et al. “Effects of Early Emollient Use in Children at High Risk of Atopic Dermatitis: A German Pilot Study.” Acta Dermato-Venereologica 103 (2023). https://doi.org/10.2340/actadv.v103.5671
Ito, Kohei, et al. “A dark matter in sake brewing: Origin of microbes producing a Kimoto-style fermentation starter.” Frontiers in Microbiology 14 (2023): 1112638. https://doi.org/10.3389/fmicb.2023.1112638
Julien, Martha E., et al. “Alterations of the bacterial ocular surface microbiome are found in both eyes of horses with unilateral ulcerative keratitis.” Plos one 18.9 (2023): e0291028. https://doi.org/10.1371/journal.pone.0291028
Kim, Jeongwon, et al. “Investigation of Surface Bacterial Diversities and Compositions in the Global Subway Facilities.” Atmosphere 14.1 (2023): 140. https://doi.org/10.3390/atmos14010140
McKinley, Kelley NL, et al. “Translocation of Oral Microbiota into the Pancreatic Ductal Adenocarcinoma Tumor Microenvironment.” Microorganisms 11.6 (2023): 1466. https://doi.org/10.3390/microorganisms11061466
Naudet, Jeanne, et al. “Identifying macroplastic pathobiomes and antibiotic resistance in a subtropical fish farm.” Marine Pollution Bulletin 194 (2023): 115267. https://doi.org/10.1016/j.marpolbul.2023.115267
Nye, Alicia K., et al. “Pilot clinical trial: propidium monoazide PCR quantifies reduction of the viable bacterial load after antiseptic preparation of canine oral mucosa.” American Journal of Veterinary Research 84.6 (2023). https://doi.org/10.2460/ajvr.23.02.0029
Sammouri, Julie, et al. “Serial Genotyping of the Human Papillomavirus in Cervical Cancer: An Insight Into Virome Dynamics During Chemoradiation Therapy.” International Journal of Radiation Oncology* Biology* Physics (2023). https://doi.org/10.1016/j.ijrobp.2023.02.018
Sitzia, Emanuela, et al. “Endotypes of Nasal Polyps in Children: A Multidisciplinary Approach.” Journal of Personalized Medicine 13.5 (2023): 707. https://doi.org/10.3390/jpm13050707
Teka, Brhanu, et al. “Cervicovaginal Microbiota Profiles in Precancerous Lesions and Cervical Cancer among Ethiopian Women.” Microorganisms 11.4 (2023): 833. https://doi.org/10.3390/microorganisms11040833
Tierney, Braden T., et al. “Viral activation and ecological restructuring characterize a microbiome axis of spaceflight-associated immune activation.” Research square (2023): rs-3. https://doi.org/10.21203/rs.3.rs-2493867/v1
Zhang, Mei, et al. “The Role of Indoor Microbiome and Metabolites in Shaping Children’s Nasal and Oral Microbiota: A Pilot Multi-Omic Analysis.” Metabolites 13.10 (2023): 1040. https://doi.org/10.3390/metabo13101040
Alsherif, Eshraq, et al. “Screening of interleukin 17F gene polymorphisms and eight subgingival pathogens in chronic periodontitis in Libyan patients.” Libyan Journal of Medicine 18.1 (2023): 2225252. https://doi.org/10.1080/19932820.2023.2225252
Epigenetics/Methylation
Aghagoli, Ghazal, et al. “Epigenome-wide analysis identifies genes and pathways linked to acoustic cry variation in preterm infants.” Pediatric Research (2020): 1-7. https://doi.org/10.1038/s41390-020-01172-0
Auvinen, Pauliina, et al. “Chromatin modifier developmental pluripotency associated factor 4 (DPPA4) is a candidate gene for alcohol-induced developmental disorders.” BMC medicine 20.1 (2022): 495. https://doi.org/10.1186/s12916-022-02699-1
Azzi S., Blaise A., Steunou V., Harbison M.D., Salem J., Brioude, F., et al. (2014). Complex Tissue‐Specific Epigenotypes in Russell–Silver Syndrome Associated with 11p15 ICR1 Hypomethylation. Human mutation 35 (10): 1211-1220. https://doi.org/10.1002/humu.22623
Carola, Valeria, et al. “Children with disruptive mood dysregulation disorder and psychopathological risk in their mothers: the function of global DNA methylation.” Frontiers in psychiatry 12 (2021). https://doi.org/10.3389/fpsyt.2021.593500
Carpentieri, Valentina, et al. “Epigenetic regulation of DAT gene promoter modulates the risk of externalizing and internalizing behaviors on a normative population: An explorative study.” Behavioural Brain Research 406 (2021): 113246. https://doi.org/10.1016/j.bbr.2021.113246
Carpentieri, Valentina, et al. “Methylation patterns within 5′-UTR of DAT1 gene as a function of allelic 3′-UTR variants and their maternal or paternal origin: May these affect the psychopathological phenotypes in children? An explorative study.” Neurosci https://doi.org/10.1016/j.neulet.2022.136916
Cerniglia, Luca, et al. “Patterns of DNA methylation at specific loci of the dopamine transporter 1 gene and psychopathological risk in trios of mothers, fathers and children.” European Journal of Developmental Psychology (2020): 1-28. https://doi.org/10.3390/bs11010009
Cimino, S., et al. “DNA Methylation and Allelic Polymorphism at the Dopamine Transporter Promoter Affect Internalizing and Externalizing Symptoms in Preschoolers.” Child Psychiatry & Human Development (2020): 1-10. https://doi.org/10.1007/s10578-020-01009-1
Cimino, Silvia, et al. “DAT1 and Its Psychological Correlates in Children with Avoidant/Restrictive Food Intake Disorder: A Cross-Sectional Pilot Study.” Behavioral Sciences 11.1 (2021): 9. https://doi.org/10.3390/bs11010009
Coppens, Grégoire, et al. “Assessment of aberrant DNA methylation two years after paediatric critical illness: a pre-planned secondary analysis of the international PEPaNIC trial.” Epigenetics (2022): 1-12. https://doi.org/10.1080/15592294.2022.2146966
Essex M.J., Thomas Boyce W., Hertzman C., Lam L.L., Armstrong J.M., Neumann S., and Kobor M.S. (2013) Epigenetic vestiges of early developmental adversity: Childhood stress exposure and DNA methylation in adolescence. Child Dev 84: 58-75. https://doi.org/10.1111/j.1467-8624.2011.01641.x
Everson, Todd M., et al. “Serious neonatal morbidities are associated with differences in DNA methylation among very preterm infants.” Clinical epigenetics 12.1 (2020): 1-15. https://doi.org/10.1186/s13148-020-00942-1
Gomaa, Noha, et al. “Association of Pediatric Buccal Epigenetic Age Acceleration With Adverse Neonatal Brain Growth and Neurodevelopmental Outcomes Among Children Born Very Preterm With a Neonatal Infection.” JAMA Network Open 5.11 (2022): e2239796-e22397 https://doi.org/10.1001/jamanetworkopen.2022.39796
Jones M.J., Farré P., McEwen L.M., MacIsaac J.L., Watt K., Neumann S.M., et al.(2013) Distinct DNA methylation patterns of cognitive impairment and trisomy 21 in down syndrome. BMC Medical Genomics 6: 58. https://doi.org/10.1186/1755-8794-6-58
Kim, Youl-Ri, et al. “Differential methylation of the oxytocin receptor gene in patients with anorexia nervosa: a pilot study.” PloS one 9.2 (2014): e88673. https://doi.org/10.1371/journal.pone.0088673
Marzilli, Eleonora, et al. “Children’s ADHD and Dysregulation Problems, DAT1 Genotype and Methylation, and Their Interplay with Family Environment.” Child & Youth Care Forum. New York: Springer US, 2022. https://doi.org/10.1007/s10566-022-09687-9
Mavioglu, Rezan Nehir, et al. “A history of childhood maltreatment is associated with altered DNA methylation levels of DNA methyltransferase 1 in maternal but not neonatal mononuclear immune cells.” Frontiers in psychiatry 13 (2022). https://doi.org/10.3389/fpsyt.2022.945343
McGill, Megan G., et al. “Maternal prenatal anxiety and the fetal origins of epigenetic aging.” Biological psychiatry (2021) https://doi.org/10.1016/j.biopsych.2021.07.025
Non, A.L., and Thayer, Z.M. (2015) Epigenetics for anthropologists: An introduction to methods. Am J Hum Biol 27: 295-303. https://doi.org/10.1002/ajhb.22679
Portales-Casamar, Elodie, et al. “DNA methylation signature of human fetal alcohol spectrum disorder.” Epigenetics & Chromatin 9.1 (2016): 25. https://doi.org/10.1186/s13072-016-0074-4
Price M.E., Cotton A.M., Lam L.L., Farre P., Emberly E., Brown C.J., et al. (2013) Additional annotation enhances potential for biologically-relevant analysis of the illumina infinium HumanMethylation450 BeadChip array. Epigenetics Chromatin 6: 4-8935-6-4. https://doi.org/10.1186/1756-8935-6-4
Raffington, Laurel, et al. “Associations of Socioeconomic Disparities With Buccal DNA-Methylation Measures Of Biological Aging.” bioRxiv (2022): 2022-12.
https://www.biorxiv.org/content/10.1101/2022.12.07.519438v1
Richter, Anne E., et al. “Altered neurodevelopmental DNA methylation status after fetal growth restriction with brain-sparing.” Journal of developmental origins of health and disease 13.3 (2022): 378-389. https://doi.org/10.1017/S2040174421000374
Ross, Jason P., et al. “Batch-effect detection, correction and characterisation in Illumina HumanMethylation450 and MethylationEPIC BeadChip array data.” Clinical Epigenetics 14.1 (2022): 1-28.
https://doi.org/10.1186/s13148-022-01277-9
Sommerer, Yasmine, et al. “A correlation map of genome-wide DNA methylation patterns between paired human brain and buccal samples.” Clinical Epigenetics 14.1 (2022): 1-10. https://doi.org/10.1186/s13148-022-01357-w
Sommerer, Yasmine, et al. “Epigenome-Wide Association Study in Peripheral Tissues Highlights DNA Methylation Profiles Associated with Episodic Memory Performance in Humans.” Biomedicines 10.11 (2022): 2798. https://doi.org/10.3390/biomedicines10112798
Taylor, Rachael M., et al. “Global DNA methylation and cognitive and behavioral outcomes at 4 years of age: A cross‐sectional study.” Brain and behavior 10.4 (2020): e01579. https://doi.org/10.1002/brb3.1579
Teh, Ai Ling, et al. “Comparison of Methyl-capture Sequencing vs. Infinium 450K methylation array for methylome analysis in clinical samples.” Epigenetics 11.1 (2016): 36-48. https://doi.org/10.1080/15592294.2015.1132136
Viet, Chi T., et al. “Brush swab as a noninvasive surrogate for tissue biopsies in epigenomic profiling of oral cancer.” Biomarker research 9.1 (2021): 1-10. https://doi.org/10.1186/s40364-021-00349-x
Carpentieri, Valentina, et al. “Methylation Dynamics on 5′-UTR of DAT1 Gene as a Bio-Marker to Recognize Therapy Success in ADHD Children.” Children 10.3 (2023): 584. https://doi.org/10.3390/children10030584
Coppens, Grégoire, et al. “Assessment of aberrant DNA methylation two years after paediatric critical illness: a pre-planned secondary analysis of the international PEPaNIC trial.” Epigenetics 18.1 (2023): 2146966. https://doi.org/10.1080/15592294.2022.2146966
Marzilli, Eleonora, et al. “Children’s ADHD and Dysregulation Problems, DAT1 Genotype and Methylation, and Their Interplay with Family Environment.” Child & Youth Care Forum. Vol. 52. No. 2. New York: Springer US, 2023. https://doi.org/10.1007/s10566-022-09687-9
Mattonet, Katharina, et al. “No association between war-related trauma or PTSD symptom severity and epigenome-wide DNA methylation in Burundian refugees.” European journal of psychotraumatology 14.2 (2023): 2228155. https://doi.org/10.1080/20008066.2023.2228155
Raffington, L., et al. “Associations of socioeconomic disparities with buccal DNA-methylation measures of biological aging.” Clinical Epigenetics 15.1 (2023): 70. https://doi.org/10.1186/s13148-023-01489-7
Stoccoro, Andrea, et al. “Prenatal Environmental Stressors and DNA Methylation Levels in Placenta and Peripheral Tissues of Mothers and Neonates Evaluated by Applying Artificial Neural Networks.” Genes 14.4 (2023): 836. https://doi.org/10.3390/genes14040836
Vanhorebeek, Ilse, et al. “Abnormal DNA methylation within genes of the steroidogenesis pathway two years after paediatric critical illness and association with stunted growth in height further in time.” Clinical Epigenetics 15.1 (2023): 116. https://doi.org/10.1186/s13148-023-01530-9
Hill, Rachel A., et al. “Maternal SARS-CoV-2 exposure alters infant DNA methylation.” Brain, Behavior, & Immunity-Health 27 (2023): 100572. https://doi.org/10.1016/j.bbih.2022.100572
Animal Applications
Al-Ghafri, Mataab K., et al. “Genetic diversity of the Nubian ibex in Oman as revealed by mitochondrial DNA.” Royal Society open science 8.5 (2021): 210125. https://doi.org/10.1098/rsos.210125
Baciu, Iulia, Ancuta Fedorca, and Georgeta Ionescu. “Noninvasive Genetics Knowledge from the Brown Bear Populations to Assist Biodiversity Conservation.” Diversity 14.2 (2022): 121. https://doi.org/10.3390/d14020121
Balázs, Gergely, et al. “A new non-invasive in situ underwater DNA sampling method for estimating genetic diversity.” Evolutionary Ecology 34.4 (2020): 633-644. https://doi.org/10.1007/s10682-020-10053-1
Cano, Irene, et al. “Non‐lethal loop‐mediated isothermal amplification assay as a point‐of‐care diagnostics tool for Neoparamoeba perurans, the causative agent of amoebic gill disease.” Journal of fish diseases 43.7 (2020): 779-790. https://doi.org/10.1111/jfd.13175
Cano, Irene, et al. “Seroconversion and Skin Mucosal Parameters during Koi Herpesvirus Shedding in Common Carp, Cyprinus carpio.” International journal of molecular sciences 21.22 (2020): 8482. https://doi.org/10.3390/ijms21228482
Cano, Irene, et al. “A Seasonal Study of Koi Herpesvirus and Koi Sleepy Disease Outbreaks in the United Kingdom in 2018 Using a Pond-Side Test.” Animals 11.2 (2021): 459. https://doi.org/10.3390/ani11020459
Cheallaigh, Clíona Ní, et al. “A common variant in the adaptor mal regulates interferon gamma signalling.” Immunity 44.2 (2016): 368-379. https://doi.org/10.1016/j.immuni.2016.01.019
Ciucani, Marta Maria, et al. “Genomes of the extinct Sicilian wolf reveal a complex history of isolation and admixture with ancient dogs.” bioRxiv (2022): 2022-01. https://doi.org/10.1101/2022.01.21.47728
Darden JE, Scott EM, Arnold C, Scallan EM, Simon BT, et al. (2019) Evaluation of the bacterial ocular surface microbiome in clinically normal cats before and after treatment with topical erythromycin. PLOS ONE 14(10): e0223859. https://doi.org/10.1371/journal.pone.0223859
Des Roches, S., et al. “Survival by genotype: patterns at Mc1r are not black and white at the W hite S ands ecotone.” Molecular ecology 26.1 (2017): 320-329. https://doi.org/10.1111/mec.13894
Doubleday, Molly, and Capercaillie Advisory Officer. “Developing a new approach to estimating the size of the UK capercaillie population using genetic material.” (2022). https://cairngormscapercaillie.scot/wp-content/uploads/2022/08/Phase-1-sample-collection-report-Developing-a-new-approach-to-estimating-the-size-of-the-UK-capercaillie-population-using-genetic-material.pdf
Dutra, Luísa, et al. “Validating the use of oral swabs for telomere length assessment in dogs.” Journal of Veterinary Behavior 40 (2020): 16-20. https://doi.org/10.1016/j.jveb.2020.07.011
Fernandez‐Senac, Carolina, et al. “A comparison of the use of different swab materials for optimal diagnosis of amoebic gill disease (AGD) in Atlantic salmon (Salmo salar L.).” Journal of Fish Diseases 43.11 (2020): 1463-1472. https://doi.org/10.1111/jfd.13243
Finlay, Margaret, et al. “The detection of Bovine Papillomavirus type 1 DNA in flies.” Virus research 144.1-2 (2009): 315-317. https://doi.org/10.1016/j.virusres.2009.04.015
Gadoin, Elsa, et al. “Fishing for the Virome of Tropical Tuna.” Viruses 13.7 (2021): 1291 https://doi.org/10.3390/v13071291
Gladstone, Nicholas S., et al. “Population genomics reveal low differentiation and complex demographic histories in a highly fragmented and endangered freshwater mussel.” Aquatic Conservation: Marine and Freshwater Ecosystems 32.8 (2022): 1235-1248. https://doi.org/10.1002/aqc.3849
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Laguardia, Alice, et al. “Assessing the feasibility of density estimation methodologies for African forest elephant at large spatial scales.” Global Ecology and Conservation 27 (2021): e01550. https://doi.org/10.1016/j.gecco.2021.e01550
Lane, Timothy W., E. M. Hallerman, and J. W. Jones. “Phylogenetic and taxonomic assessment of the endangered Cumberland bean, Villosa trabalis and purple bean, Villosa perpurpurea (Bivalvia: Unionidae).” Conservation genetics 17.5 (2016): 1109-1124. https://doi.org/10.1007/s10592-016-0847-0
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Macfarlane, C.M., and Badge, R.M. (2015) Genome-wide amplification of proviral sequences reveals new polymorphic HERV-K(HML-2) proviruses in humans and chimpanzees that are absent from genome assemblies. Retrovirology 12: 35-015-0162-8. https://doi.org/10.1186/s12977-015-0162-8
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Melis C., Borg Å.A., Espelien I.S., and Jensen H. (2013) Low neutral genetic variability in a specialist puffin hunter: The norwegian lundehund. Anim Genet 44:348-351. https://doi.org/10.1111/age.12000
Melis, Claudia, et al. “Genetic rescue of the highly inbred Norwegian Lundehund.” Genes 13.1 (2022): 163.
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Monteiro, N. M., et al. “Validating the use of colouration patterns for individual recognition in the worm pipefish using a novel set of microsatellite markers.” Molecular ecology resources 14.1 (2014): 150-156. https://doi.org/10.1111/1755-0998.12151
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Petchey, Alex, et al. “Characterisation of 9 polymorphic microsatellite markers for the Critically Endangered lemur leaf frog Agalychnis lemur.” Conservation genetics resources 6.4 (2014): 971-973. https://doi.org/10.1007/s12686-014-0261-1
Pierezan, Felipe, et al. “The skin microbiome in allergen‐induced canine atopic dermatitis.” Veterinary Dermatology 27.5 (2016): 332 https://doi.org/10.1111/vde.12366
Robinson, Chloe Victoria, and Hanna Katariina Nuuttila. “Don’t Hold Your Breath: Limited DNA Capture Using Non-Invasive Blow Sampling for Small Cetaceans.” Aquatic Mammals 46.1 (2020): 32-41. https://doi.org/10.1578/AM.46.1.2020.32
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Sánchez-Molano, E., Pong-Wong, R., Clements, D.N., Blott, S.C., Wiener, P., and Woolliams, J.A. (2015) Genomic prediction of traits related to canine hip dysplasia 6: 97. https://doi.org/10.3389/fgene.2015.00097
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Seyer, Lindsay D., et al. “Description of non‐brachycephalic canine conjunctival microbiome before and after application of an antiseptic preparation.” Veterinary Ophthalmology (2022). https://doi.org/10.1111/vop.12992
Showering, Alicia, et al. “Skin microbiome alters attractiveness to Anopheles mosquitoes.” BMC microbiology 22.1 (2022): 98. https://doi.org/10.1186/s12866-022-02502-4
Sima, C., et al. “Identification of quantitative trait loci influencing inflammation‐mediated alveolar bone loss: insights into polygenic inheritance of host–biofilm disequilibria in periodontitis.” Journal of periodontal research 51.2 (2016): 237-249. https://doi.org/10.1111/jre.12303
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Smith, Chase H., et al. “Resolving species boundaries in the critically imperiled freshwater mussel species, Fusconaia mitchelli (Bivalvia: Unionidae).” Journal of Zoological Systematics and Evolutionary Research 59.1 (2021): 60-77. https://doi.org/10.1111/jzs.12412
Thomas, Sarah, et al. “DNA Yield and Turtle Handling Time: Buccal Swabs Versus Blood Samples from Red-Eared Sliders and Eastern Musk Turtles.” Southeastern Naturalist 19.2 (2020): 355-362. https://doi.org/10.1656/058.019.0216
Vladimir, Dimitrijević, et al. “Use of Microsatellites in Genetic Diversity Assessment, Parentage Testing and Individual Identification of the Kangal Shepherd Dog.” Acta Veterinaria 70.2 (2020): 170-181. https://doi.org/10.2478/acve-2020-0012
Walsh, Mary L., et al. “Evaluation of the ocular surface mycobiota in clinically normal horses.” Plos one 16.2 (2021): e0246537. https://doi.org/10.1371/journal.pone.0246537
Weigand, Hannah, Jennifer Cross Lopez de Llergo, and Alain C. Frantz. “Genomic basis for an informed conservation management of Pelophylax water frogs in Luxembourg.” Ecology and Evolution 12.4 (2022): e8810. https://doi.org/10.1002/ece3.8810
Werhahn G,Senn H,Kaden J, Joshi J,Bhattarai S, Kusi N, Sillero-Zubiri C, Macdonald DW. 2017 Phylogenetic evidence for the ancient Himalayan wolf : towards a clarification of its taxonomic status based on genetic sampling from western Nepal. R.Soc. opensci.4:170186. https://doi.org/10.1098/rsos.170186
Werhahn, Geraldine, et al. “Himalayan wolf foraging ecology and the importance of wild prey.” Global Ecology and Conservation 20 (2019): e00780. https://doi.org/10.1016/j.gecco.2019.e00780
Willsie, Julia A., Todd J. Morris, and David T. Zanatta. “Morphometric Analyses Distinguish Wabash Pigtoe (Fusconaia flava) and Round Pigtoe (Pleurobema sintoxia) Mussels.” Diversity 12.9 (2020): 337. https://doi.org/10.3390/d12090337
Yergeau, Donald A., et al. “Forward genetic screens in Xenopus using transposon-mediated insertional mutagenesis.” Xenopus Protocols. Humana Press, Totowa, NJ, 2012. 111-127. https://doi.org/10.1007/978-1-61779-992-1_6
Effelsberg, Natalie, et al. “Pilot study on nasal microbiota dynamics and MRSA carriage of a pig cohort housed on straw bedding.” Molecular Microbiology (2023). https://doi.org/10.1111/mmi.15136
Gadoin, Elsa, et al. “Fishing for the microbiome of tropical tuna.” Microbial ecology 86.1 (2023): 742-755. https://10.1007/s00248-022-02096-4
Gafen, Hannah B., et al. “Alterations to the bovine bacterial ocular surface microbiome in the context of infectious bovine keratoconjunctivitis.” Animal Microbiome 5.1 (2023): 60. https://doi.org/10.1186/s42523-023-00282-4
Gafen, Hannah B., et al. “Relative and Quantitative Characterization of the Bovine Bacterial Ocular Surface Microbiome in the Context of Suspected Ocular Squamous Cell Carcinoma.” Animals 13.12 (2023): 1976. https://doi.org/10.3390/ani13121976
Julien, Martha E., et al. “Alterations of the bacterial ocular surface microbiome are found in both eyes of horses with unilateral ulcerative keratitis.” Plos one 18.9 (2023): e0291028. https://doi.org/10.1371/journal.pone.0291028
Naudet, Jeanne, et al. “Identifying macroplastic pathobiomes and antibiotic resistance in a subtropical fish farm.” Marine Pollution Bulletin 194 (2023): 115267. https://doi.org/10.1016/j.marpolbul.2023.115267
Nye, Alicia K., et al. “Pilot clinical trial: propidium monoazide PCR quantifies reduction of the viable bacterial load after antiseptic preparation of canine oral mucosa.” American Journal of Veterinary Research 84.6 (2023). https://doi.org/10.2460/ajvr.23.02.0029
Ciucani, Marta Maria, et al. “The extinct Sicilian wolf shows a complex history of isolation and admixture with ancient dogs.” Iscience 26.8 (2023). https://doi.org/10.1016/j.isci.2023.107307
Dicks, Kara L., et al. “Genetic diversity in global populations of the critically endangered addax (Addax nasomaculatus) and its implications for conservation.” Evolutionary Applications 16.1 (2023): 111-125. https://doi.org/10.1111/eva.13515
Harrison, Matthew, et al. “A Comparison of Non-Destructive Visceral Swab and Tissue Biopsy Sampling Methods for Genotyping-by-Sequencing in the Freshwater Mussel Fusconaia askewi.” Genes 14.6 (2023): 1197. https://doi.org/10.3390/genes14061197
Koutsokali, Maria, Christina Dianni, and Michael Valahas. “Buccal swabs as an effective alternative to traditional tissue sampling methods for DNA analyses in Chamaeleonidae.” Wildlife Biology 2023.2 (2023): e01052. https://doi.org/10.1002/wlb3.01052
Whelan, Nathan V., et al. “Hidden in the hills: phylogeny of the freshwater mussel genus Alasmidonta (Bivalvia: Unionidae) and description of a new species.” Zoological Journal of the Linnean Society 198.2 (2023): 650-676. https://doi.org/10.1093/zoolinnean/zlac106
Meier, Amelia C., et al. “Fruit availability and human disturbance influence forest elephant group size.” Animal Behaviour 203 (2023): 171-182. https://doi.org/10.1016/j.anbehav.2023.07.002
PCR/qPCR/STR/RFLP
Alsaleh, Abrar B., et al. “The impact of chimerism on DNA-based human identification from skin surface cells of post-allogenic hematopoietic stem cell transplantation (HCST) patients.” Forensic Science International 318 (2021): 110636. https://doi.org/10.1016/j.forsciint.2020.110636
Bakeberg, Megan, et al. “The TOMM40 ‘523’polymorphism in disease risk and age of symptom onset in two independent cohorts of Parkinson’s disease.” (2020). https://doi.org/10.21203/rs.3.rs-119345/v1
Bonsu, Dan OM, et al. “Evaluation of the efficiency of Isohelix™ and Rayon swabs for recovery of DNA from metal surfaces.” Forensic Science, Medicine and Pathology (2020): 1-9. https://doi.org/10.1007/s12024-020-00329-x
Bonsu, Dan Osei Mensah, Denice Higgins, and Jeremy J. Austin. “Forensic touch DNA recovery from metal surfaces–A review.” Science & Justice 60.3 (2020): 206-215. https://doi.org/10.1016/j.scijus.2020.01.002
Bonsu, Dan OM, et al. “Comparison of Isohelix™ and Rayon swabbing systems for touch DNA recovery from metal surfaces.” Forensic Science, Medicine and Pathology 17.4 (2021): 577-584. https://doi.org/10.1007/s12024-021-00423-8
Carson, Sasha, et al. “The potential for investigator-mediated contamination to occur during routine search activities.” Forensic Science, Medicine and Pathology 18.3 (2022): 299-310. https://doi.org/10.1007/s12024-022-00465-6
Chan, Kamfai, et al. “A rapid and low-cost PCR thermal cycler for infectious disease diagnostics.” PloS one 11.2 (2016): e0149150. https://doi.org/10.1371/journal.pone.0149150
Cirillo J., Hughes J., Ridding M., Thomas P.Q., and Semmler J.G. (2012) Differential modulation of motor cortex excitability in BDNF met allele carriers following experimentally induced and use‐dependent plasticity. Eur J Neurosci 36: 2640-2649. https://doi.org/10.1111/j.1460-9568.2012.08177.x
Cook, Russell, Natasha Mitchell, and Julianne Henry. “Assessment of Diamond™ Nucleic Acid Dye for the identification and targeted sampling of latent DNA in operational casework.” Forensic Science International: Genetics 55 (2021): 102579. https://doi.org/10.1016/j.fsigen.2021.102579
Crauciuc, George Andrei, et al. “Significant Associations between AXIN1 rs1805105, rs12921862, rs370681 Haplotypes and Variant Genotypes of AXIN2 rs2240308 with Risk of Congenital Heart Defects.” International Journal of Environmental Research and Public Health 17.20 (2020): 7671. https://doi.org/10.3390/ijerph17207671
Devesse, L., Syndercombe Court, D., and Cowan, D. (2015) Determining the authenticity of athlete urine in doping control by DNA analysis. Drug Test. Analysis 7: 912-18 https://doi.org/10.1002/dta.1785
Dlouhá, Lucie, et al. “Five genetic polymorphisms of cytochrome P450 enzymes in the Czech non-Roma and Czech Roma population samples.” Drug metabolism and personalized therapy 1.ahead-of-print (2020). https://doi.org/10.1515/dmdi-2020-0103
Griffin, Amy, et al. “DNA on drugs! A preliminary investigation of DNA deposition during the handling of illicit drug capsules.” Forensic Science International: Genetics 54 (2021): 102559. https://doi.org/10.1016/j.fsigen.2021.102559
Griffin, Amy, et al. “DNA on drugs.” Forensic Science International: Genetics Supplement Series 8 (2022): 3-4.
https://doi.org/10.1016/j.fsigss.2022.09.001
Griffin, Amy, et al. “DNA on drugs (part 2): An extended study into the transfer and persistence of DNA onto illicit drug capsules using realistic scenarios.” Forensic Science International: Genetics 60 (2022): 102740. https://doi.org/10.1016/j.fsigen.2022.102740
Griffin, Amy, et al. “Recovery of integrated and surface trace DNA from illicit drug tablets.” Forensic Science International: Genetics 61 (2022): 102772. https://doi.org/10.1016/j.fsigen.2022.102772
Henst, R.H., Jaspers, R.T., Roden, L.C., and Rae, D.E. (2015) A chronotype comparison of South African and Dutch marathon runners: The role of scheduled race start times and effects on performance. Chronobiol Int 32: 858-868. https://doi.org/10.3109/07420528.2015.1048870
Hubáček, Jaroslav A., et al. “Different prevalence of T2DM risk alleles in Roma population in comparison with the majority Czech population.” Molecular Genetics & Genomic Medicine 8.9 (2020): e1361. https://doi.org/10.1002/mgg3.1361
Hubáček, Jaroslav A., et al. “Increased prevalence of the CVD-associated ANRIL allele in the Roma/Gypsy population in comparison with the majority Czech population.” Genetics and Molecular Biology 44 (2021). https://doi.org/10.1590/1678-4685-GMB-2020-0405
Kanokwongnuwut, Piyamas, et al. “How many cells are required for successful DNA profiling?.” Forensic Science International: Genetics 51 (2021): 102453. https://doi.org/10.1016/j.fsigen.2020.102453
Khalil, Dalia, et al. “Recruiting Immigrant and Refugee Arab American Mother–Father–Infant Triads Resettling in the United States: A Feasibility Study.” Canadian Journal of Nursing Research 52.2 (2020): 139-148. https://doi.org/10.1177/0844562120910856
Li, Jiyu, et al. “Selective single-bacteria extraction based on capture and release of microemulsion droplets.” Scientific Reports 12.1 (2022): 1-12. https://doi.org/10.1038/s41598-022-19844-8
Lian, M., Rajan-Babu, I., Singh, K., Lee, C.G., Law, H., and Chong, S.S. (2015) Efficient and Highly Sensitive Screen for Myotonic Dystrophy Type 1 Using a One-Step Triplet-Primed PCR and Melting Curve Assay 17: 128-135. https://doi.org/10.1016/j.jmoldx.2014.10.001
Puliatti, Lucas, Oliva Handt, and Duncan Taylor. “The level of DNA an individual transfers to untouched items in their immediate surroundings.” Forensic Science International: Genetics 54 (2021): 102561. https://doi.org/10.1016/j.fsigen.2021.102561
Quabius, Elgar Susanne, et al. “Tonsillar swabs and sputum predict SLPI‑and AnxA2 expression in tonsils: A prospective study on smoking dependent SLPI‑and AnxA2‑expression, and tonsillar HPV infection.” Oncology Letters 23.5 (2022): 1-13. https://doi.org/10.3892/ol.2022.13284
Quinonez, Shane C., and Zewdu Terefework. “The introduction of clinical genetic testing in Ethiopia: Experiences and lessons learned.” American Journal of Medical Genetics Part A 185.10 (2021): 2995-3004. https://doi.org/10.1002/ajmg.a.62396
Roher A.E., Debbins J.P., Malek-Ahmadi M., Chen K., Pipe J.G., Maze S., et al.(2012) Cerebral blood flow in alzheimer’s disease. Vasc Health Risk Manag 8: 599-611. https://doi.org/10.2147/VHRM.S34874
Rowles J., Karr S., Gurney M.K., Brownlow W., Garza M., and Olsen M. (2012) Description of a facile, rapid, and inexpensive method to profile for the organic cation transporter (oct1) del420 variant. Int J LifeSc Bt & Pharm Res. 1: 36-41. http://www.ijlbpr.com/index.php?m=content&c=index&a=show&catid=116&id=371
Senzaki, Sawa, et al. “Roles of culture and COMT Val58Met gene on neural basis of executive function: A comparison between Japanese and American children.” Developmental Psychobiology. https://doi.org/10.1002/dev.22087
Shawa, Nyambura, and Laura Catherine Roden. “Chronotype of South African adults is affected by solar entrainment.” Chronobiology international 33.3 (2016): 315-323. https://doi.org/10.3109/07420528.2016.1144608
Shi, Q., Wang, X.S., Li, G., Shah, N.D., Orlowski, R.Z., Williams, L.A., et al.(2015) Racial/ethnic disparities in inflammatory gene single‐nucleotide polymorphisms as predictors of a high risk for symptom burden in patients with multiple myeloma 1 year after diagnosis. Cancer 121: 1138-1146. https://doi.org/10.1002/cncr.29154
Stark, Christina Runow, et al. “Brush Samples of Oral Lesions to FTA Elute Card for High-risk Human Papilloma Virus Diagnosis.” Anticancer Research 41.1 (2021): 269-277. https://doi.org/10.21873/anticanres.14773
Van Breda, K., Collins, M., Stein, D.J., and Rauch, L. (2015) The COMT val 158 met polymorphism in ultra-endurance athletes. Physiol Behav 151: 279-283. https://doi.org/10.1016/j.physbeh.2015.07.039
Wagaiyu, E.G., and Bulimo, W.D. (2014) Genetic polymorphisms in IL-1A and IL-1B isoforms and their associations with chronic periodontitis in the Swahili people of Kenya. IOSR-JDMS 13 (11): 7-15 http://erepository.uonbi.ac.ke/handle/11295/77369
Wong, G., Wong, I., Chan, K., Hsieh, Y., and Wong, S. (2015) A Rapid and Low-Cost PCR Thermal Cycler for Low Resource Settings. PLoS One 10: e0131701. https://doi.org/10.1371/journal.pone.0131701
Zijlmans, Wilco, et al. “Cohort profile: Caribbean Consortium for Research in Environmental and Occupational Health (CCREOH) Cohort Study: influences of complex environmental exposures on maternal and child health in Suriname.” BMJ Open 10.9 (2020). https://doi.org/10.1136/bmjopen-2019-034702
Bonsu, Dan Nana Osei, Denice Higgins, and Jeremy J. Austin. “From clean spaces to crime scenes: Exploring trace DNA recovery from titania-coated self-cleaning substrates.” Science & Justice 63.5 (2023): 588-597. https://doi.org/10.1016/j.scijus.2023.07.003
Iyavoo, Sasitaran, et al. “Unveiling genetic diversity and forensic utility of SureID® human DNA identification kits: a comprehensive analysis of 44 autosomal STR loci in English and Irish populations.” Annals of Human Biology 50.1 (2023): 399-406. https://doi.org/10.1080/03014460.2023.2265814
McCrane, Samantha M., and Connie J. Mulligan. “An innovative transfer DNA experimental design and qPCR assay: Protocol and pilot study.” Journal of Forensic Sciences 68.3 (2023): 990-1000. https://doi.org/10.1111/1556-4029.15243
Weeks, Chelsea C. Hays, et al. “The Independent Walking for Brain Health Intervention for Older Adults: Protocol for a Pilot Randomized Controlled Trial.” JMIR Research Protocols 12.1 (2023): e42980. https://doi.org/10.2196/42980
Alsherif, Eshraq, et al. “Screening of interleukin 17F gene polymorphisms and eight subgingival pathogens in chronic periodontitis in Libyan patients.” Libyan Journal of Medicine 18.1 (2023): 2225252. https://doi.org/10.1080/19932820.2023.2225252
Telomere Length Studies
Asok A., Bernard K., Roth T., Rosen J., and Dozier M. (2013) Parental responsiveness moderates the association between early-life stress and reduced telomere length. Dev Psychopathol 25: 577-585. https://doi.org/10.1017/S0954579413000011
Barha, Cindy K., et al. “Number of children and telomere length in women: a prospective, longitudinal evaluation.” PloS one 11.1 (2016): e0146424. https://doi.org/10.1371/journal.pone.0146424
Bordas-Martínez, Jaume, et al. “Idiopathic pulmonary fibrosis cluster analysis highlights diagnostic delay and cardiovascular comorbidity association with outcome.” ERJ open research 7.2 (2021). https://doi.org/10.1183/23120541.00897-2020
Drury S.S., Mabile E., Brett Z.H., Esteves K., Jones E., Shirtcliff E.A., and Theall, K.P. (2014). The association of telomere length with family violence and disruption. Pediatrics, 134(1): peds-2013-3415. https://doi.org/10.1542/peds.2013-3415
Drury S. S., Shirtcliff E.A., Shachet A., Phan J., Mabile, E., Brett, Z.H., and Theall, K. P. (2014). Growing up or growing old? Cellular aging linked with testosterone reactivity to stress in youth. The American journal of the medical sciences 348(2): 92-100. https://doi.org/10.1097/MAJ.0000000000000299
Esteves, Kyle C., et al. “Adverse childhood experiences: implications for offspring telomere length and psychopathology.” American Journal of Psychiatry 177.1 (2020): 47-57. https://doi.org/10.1176/appi.ajp.2019.18030335
Hautekiet, Pauline, et al. “Child buccal telomere length and mitochondrial DNA content as biomolecular markers of ageing in association with air pollution.” Environment International 147 (2021): 106332. https://doi.org/10.1016/j.envint.2020.106332
Howell, Meghan P., et al. “Impact of prenatal tobacco smoking on infant telomere length trajectory and ADHD symptoms at 18 months: a longitudinal cohort study.” BMC medicine 20.1 (2022): 153. https://doi.org/10.1186/s12916-022-02340-1
Humphreys, Kathryn L., et al. “Accelerated telomere shortening: Tracking the lasting impact of early institutional care at the cellular level.” Psychiatry Research 246 (2016): 95-100. https://doi.org/10.1016/j.psychres.2016.09.023
Küffer, Andreas Lorenz, et al. “Posttraumatic stress disorder, adverse childhood events, and buccal cell telomere length in elderly swiss former indentured child laborers.” Frontiers in Psychiatry 7 (2016). https://doi.org/10.3389/fpsyt.2016.00147
Merino, Ana, et al. “Membrane particles from mesenchymal stromal cells reduce the expression of fibrotic markers on pulmonary cells.” PloS one 16.3 (2021): e0248415. https://doi.org/10.1371/journal.pone.0248415
Nickels, Matt, et al. “Elite swimmers possess shorter telomeres than recreationally active controls.” Gene 769 (2021): 145242. https://doi.org/10.1016/j.gene.2020.145242
Planas-Cerezales, Lurdes, et al. “Lung Transplant Improves Survival and Quality of Life Regardless of Telomere Dysfunction.” Frontiers in medicine 8 (2021). https://doi.org/10.3389/fmed.2021.695919
Wade, Mark, et al. “Telomere length and psychopathology: specificity and direction of effects within the Bucharest Early Intervention Project.” Journal of the American Academy of Child & Adolescent Psychiatry 59.1 (2020): 140-148. https://doi.org/10.1016/j.jaac.2019.02.013
Wong L.S., Huzen J., de Boer R.A., van Gilst W.H., van Veldhuisen D.J., and van der Harst P. (2011) Telomere length of circulating leukocyte subpopulations and buccal cells in patients with ischemic heart failure and their offspring. PloS One 6: e23118. https://doi.org/10.1371/journal.pone.0023118
Khalil, Dalia, et al. “Psychosocial Factors and Telomere Length Among Parents and Infants of Immigrant Arab American Families.” Biological Research For Nursing 25.1 (2023): 137-149. https://doi.org/10.1177/10998004221124145
Mitochondrial DNA
Hautekiet, Pauline, et al. “Higher buccal mtDNA content is associated with residential surrounding green in a panel study of primary school children.” Environmental Research 213 (2022): 113551. https://doi.org/10.1016/j.envres.2022.113551
Giannikou, Krinio, et al. “Spectrum of germline and somatic mitochondrial DNA variants in Tuberous Sclerosis Complex.” Frontiers in Genetics 13 (2023): 917993. https://doi.org/10.3389/fgene.2022.917993
Protein Activtiy
Somers, Tim, et al. “Mitochondrial complex III activity: from invasive muscle biopsies to patient-friendly buccal swab analysis.” Scientific Reports 13.1 (2023): 9638. https://doi.org/10.1038/s41598-023-36741-w
COVID-19
Brune, Zarina, et al. “Effectiveness of SARS-CoV-2 Decontamination and Containment in a COVID-19 ICU.” International Journal of Environmental Research and Public Health 18.5 (2021): 2479. https://doi.org/10.3390/ijerph18052479
Burdett, Alison, et al. “Pooled sputum to optimise the efficiency and utility of rapid, point-of-care molecular SARS-CoV-2 testing.” BMC infectious diseases 21.1 (2021): 1-10. https://doi.org/10.1186/s12879-021-06316-z
Jayakody, Harindi, et al. “Molecular diagnostics in the era of COVID-19.” Analytical Methods 13.34 (2021): 3744-3763. https://doi.org/10.1039/D1AY00947H
Parker, Ceth W., et al. “End-to-End Protocol for the Detection of SARS-CoV-2 from Built Environments.” Msystems 5.5 (2020). https://doi.org/10.1128/mSystems.00771-20.
Rufino de Sousa, Nuno, et al. “Detection and isolation of airborne SARS‐CoV‐2 in a hospital setting.” Indoor air 32.3 (2022): e13023. https://doi.org/10.1111/ina.13023
Somerville, Carter C., et al. “Prospective analysis of SARS-CoV-2 dissemination to environmental surfaces during endoscopic procedures.” Endoscopy International Open 9.05 (2021): E701-E705. https://doi.org/10.1055/a-1395-6946
Hill, Rachel A., et al. “Maternal SARS-CoV-2 exposure alters infant DNA methylation.” Brain, Behavior, & Immunity-Health 27 (2023): 100572. https://doi.org/10.1016/j.bbih.2022.100572