1. Animal applications


Older, Caitlin E., Diesel, Alison B., Lawhon, Sara D., Queiroz, Cintia R. R., Henker, Luan C., Rodrigues Hoffmann, Aline. “The feline cutaneous and oral microbiota are influenced by breed and environment

Evaluation of the bacterial ocular surface microbiome in clinically normal cats before and after treatment with topical erythromycin
Darden JE, Scott EM, Arnold C, Scallan EM, Simon BT, et al. (2019) Evaluation of the bacterial ocular surface microbiome in clinically normal cats before and after treatment with topical erythromycin. PLOS ONE 14(10): e0223859. https://doi.org/10.1371/journal.pone.0223859



Potocka, Natalia, et al. “Association of ACTN3 Polymorphism with Body Somatotype and Cardiorespiratory Fitness in Young Healthy Adults.” International journal of environmental research and public health 16.9 (2019): 1489.

Breen, Eley et al. The Genetic Links to Anxiety and Depression (GLAD) Study: online recruitment into the largest recontactable study of depression and anxiety

Byrne, Enda M., et al. “The Australian Genetics of Depression Study: Study Description and Sample Characteristics.” bioRxiv(2019): 626762.

Lacourt A, Amadéo B, Gramond C, et al. ETIOSARC study : environmental aetiology of sarcomas from a French prospective multicentric population based case–control study— study protocol. BMJ Open 2019;9:e030013. doi:10.1136/bmjopen-2019-030013

Luiz Fernando W. RoeschPriscila Thiago DobblerVictor Satler PylroBryan KolaczkowskiJennifer C. DrewEric W. Triplett

Des Roches, S., et al. “Survival by genotype: patterns at Mc1r are not black and white at the White Sands ecotone.” Molecular Ecology (2016).


FAGUNDO, RAQUEL ANNE. The Phlyogenetics And Biogeography Of The Freshwater Pearly Mussel Genus Elliptio (Bivalvia: Unionidae). Diss. Appalachian State University, 2016.

Lane, Timothy W., E. M. Hallerman, and J. W. Jones. “Phylogenetic and taxonomic assessment of the endangered Cumberland bean, Villosa trabalis and purple bean, Villosa perpurpurea (Bivalvia: Unionidae).” Conservation Genetics 17.5 (2016): 1109-1124.


Kolomyjec S.H., Grant T.R., Johnson C.N., and Blair D. (2014) Regional population structuring and conservation units in the platypus (ornithorhynchus anatinus). Aust J Zool 61: 378-385.


Monteiro N., Silva R., Cunha M., Antunes A., Jones A., and Vieira M. (2014) Validating the use of colouration patterns for individual recognition in the worm pipefish using a novel set of microsatellite markers. Molecular Ecology Resources 14: 150-156.


Sima, C., Cheng, Q., Rautava, J., Levesque, C., Sherman, P., and Glogauer, M. (2015) Identification of quantitative trait loci influencing inflammation‐mediated alveolar bone loss: insights into polygenic inheritance of host–biofilm disequilibria in periodontitis. J Periodont Res (in press).

Cheallaigh, Clíona Ní, et al. “A common variant in the adaptor Mal regulates Interferon gamma signaling.” Immunity 44.2 (2016): 368-379.


Finlay M., Yuan Z., Burden F., Trawford A., Morgan I.M., Saveria Campo M., and Nasir L. (2009) The detection of bovine papillomavirus type 1 DNA in flies. Virus Res 144: 315-317.


Petchey A., Gray A., Andrén C., Skelton T., Kubicki B., Allen C., and Jehle R. (2014) Characterisation of 9 polymorphic microsatellite markers for the Critically Endangered lemur leaf frog Agalychnis lemur. Conservation Genetics Resources:1:3.

Yergeau D.A., Kelley C.M., Zhu H., Kuliyev E., and Mead P.E. (2012) Forward genetic screens in xenopus using transposon-mediated insertional mutagenesis. Methods Mol Biol 917: 111-127.


Kropatsch, R., Melis, C., Stronen, A.V., Jensen, H., and Epplen, J.T. (2015) Molecular Genetics of Sex Identification, Breed Ancestry and Polydactyly in the Norwegian Lundehund Breed. J Hered 106 (4): 403-406.

Meason-Smith, C., Diesel, A., Patterson, A.P., Older, C.E., Mansell, J.M., Suchodolski, J.S., and Rodrigues Hoffmann, A. (2015) What is living on your dog’s skin? Characterization of the canine cutaneous mycobiota and fungal dysbiosis in canine allergic dermatitis. FEMS Microbiol Ecol 91 (12): (in press).

Melis C., Borg Å.A., Espelien I.S., and Jensen H. (2013) Low neutral genetic variability in a specialist puffin hunter: The norwegian lundehund. Anim Genet 44: 348-351.

Mellanby R.J., Ogden R., Clements D.N., French A.T., Gow A.G., Powell R., et al.(2013) Population structure and genetic heterogeneity in popular dog breeds in the UK. The Veterinary Journal 196: 92-97.

Sánchez-Molano, E., Pong-Wong, R., Clements, D.N., Blott, S.C., Wiener, P., and Woolliams, J.A. (2015) Genomic prediction of traits related to canine hip dysplasia 6: 97.

Simpson, Siobhan, et al. “Multiple genetic associations with Irish wolfhound dilated cardiomyopathy.” BioMed Research International 2016 (2016).

Persson, Mia E., et al. “Genomic regions associated with interspecies communication in dogs contain genes related to human social disorders.” Scientific reports 6 (2016).

Pierezan, Felipe, et al. “The skin microbiome in allergen‐induced canine atopic dermatitis.” Veterinary Dermatology 27.5 (2016): 332

Werhahn G,Senn H,Kaden J, Joshi J,Bhattarai S, Kusi N, Sillero-Zubiri C, Macdonald DW. 2017 Phylogenetic evidence for the ancient Himalayan wolf : towards a clarification of its taxonomic status based on genetic sampling from western Nepal. R.Soc. opensci.4:170186.

Geraldine Werhahn, Naresh Kusi, Xiaoyu Li, Cheng Chen, Lu Zhi, Raquel Lázaro Martín, Claudio Sillero-Zubiri, David W. Macdonald, Himalayan wolf foraging ecology and the importance of wild Prey


Hardwick R.J., Machado L.R., Zuccherato L.W., Antolinos S., Xue Y., Shawa N., et al. (2011) A worldwide analysis of beta‐defensin copy number variation suggests recent selection of a high‐expressing DEFB103 gene copy in east asia. Hum Mutat 32: 743-750.

Macfarlane, C.M., and Badge, R.M. (2015) Genome-wide amplification of proviral sequences reveals new polymorphic HERV-K(HML-2) proviruses in humans and chimpanzees that are absent from genome assemblies. Retrovirology 12: 35-015-0162-8.

2. Epigenetics


Azzi S., Blaise A., Steunou V., Harbison M.D., Salem J., Brioude, F., et al. (2014). Complex Tissue‐Specific Epigenotypes in Russell–Silver Syndrome Associated with 11p15 ICR1 Hypomethylation. Human mutation 35 (10): 1211-1220.

Essex M.J., Thomas Boyce W., Hertzman C., Lam L.L., Armstrong J.M., Neumann S., and Kobor M.S. (2013) Epigenetic vestiges of early developmental adversity: Childhood stress exposure and DNA methylation in adolescence. Child Dev 84: 58-75.

Jones M.J., Farré P., McEwen L.M., MacIsaac J.L., Watt K., Neumann S.M., et al.(2013) Distinct DNA methylation patterns of cognitive impairment and trisomy 21 in down syndrome. BMC Medical Genomics 6: 58.

Hookenson K.V. (2014) Programming of stress regulation in 5-7 year old children by maternal gestational mood and antidepressant use.

Kim, Y.R., Kim, J.H., Kim, M.J., and Treasure, J. (2014) Differential methylation of the oxytocin receptor gene in patients with anorexia nervosa: a pilot study. PLoS One 9: e88673.

Non, A.L., and Thayer, Z.M. (2015) Epigenetics for anthropologists: An introduction to methods. Am J Hum Biol 27: 295-303.

Price M.E., Cotton A.M., Lam L.L., Farre P., Emberly E., Brown C.J., et al. (2013) Additional annotation enhances potential for biologically-relevant analysis of the illumina infinium HumanMethylation450 BeadChip array. Epigenetics Chromatin 6: 4-8935-6-4.

Quirt J.S. (2012) Epigenetic DNA methylation is not associated with natural variation in caregiver-infant physical contact time in a cross-sectional sample of human toddlers.

Youl-Ri K., Jeong-Hyun K., Mi Jeong K., and Treasure J. (2014) Differential Methylation of the Oxytocin Receptor Gene in Patients with Anorexia Nervosa: A Pilot Study. PloS one 9(2):e88673.

Teh, Ai Ling, et al. “Comparison of Methyl-capture Sequencing vs. Infinium 450K methylation array for methylome analysis in clinical samples.” Epigenetics 11.1 (2016): 36-48.

Portales-Casamar, Elodie, et al. “DNA methylation signature of human fetal alcohol spectrum disorder.” Epigenetics & Chromatin 9.1 (2016): 25.

3. Microbiology


Adams E.R., Gomez M.A., Scheske L., Rios R., Marquez, R., Cossio, A., et al. (2014). Sensitive diagnosis of cutaneous leishmaniasis by lesion swab sampling coupled to qPCR. Parasitology 141:1891-1897.

Bankvall, M., Sjöberg, F., Gale, G., Wold, A., Jontell, M., and Östman, S. (2014) The oral microbiota of patients with recurrent aphthous stomatitis. J Oral Microb6: 10.

Kalyan, S., Wang, J., Quabius, E.S., Huck, J., Wiltfang, J., Baines, J.F., and Kabelitz, D. (2015) Systemic immunity shapes the oral microbiome and susceptibility to bisphosphonate-associated osteonecrosis of the jaw. J Transl Med 13: 212-015-0568-z.

Kaspar, U., Kriegeskorte, A., Schubert, T., Peters, G., Rudack, C., Pieper, D.H., et al. (2015) The Culturome of the Human Nose Habitats Reveals Individual Bacterial Fingerprint Patterns. Environ Microbiol (in press).

Rautava, J., Pinnell, L.J., Vong, L., Akseer, N., Assa, A., and Sherman, P.M. (2015) Oral microbiome composition changes in mouse models of colitis. J Gastroenterol Hepatol 30: 521-527.

Schmidt, B.L., Kuczynski, J., Bhattacharya, A., Huey, B., Corby, P.M., Queiroz, E.L., et al. (2014) Changes in abundance of oral microbiota associated with oral cancer. PlosOne 9 (6): e98741.

Pearce, D. A., et al. “Microbiology: lessons from a first attempt at Lake Ellsworth.” Philosophical transactions. Series A, Mathematical, physical, and engineering sciences 374.2059 (2016).

McQuillan, Jonathan S., et al. “Buzz off! An evaluation of ultrasonic acoustic vibration for the disruption of marine micro‐organisms on sensor‐housing materials.” Letters in applied microbiology 63.6 (2016): 393-399.

McFrederick, Quinn S., et al. “Flowers and Wild Megachilid Bees Share Microbes.” Microbial Ecology 73.1 (2017): 188-200.

Pierezan, Felipe, et al. “The skin microbiome in allergen‐induced canine atopic dermatitis.” Veterinary Dermatology 27.5 (2016): 332.

Magiopoulos, I., et al. “A multi-parametric assessment of decontamination protocols for the subglacial Lake Ellsworth probe.” Journal of microbiological methods 123 (2016): 87-93.

Fabian Cieplik, Egija Zaura, Bernd W. Brandt, Mark J. Buijs, Wolfgang Buchalla, Wim Crielaard, Marja L. Laine, Dong Mei Deng & Rob A. M. Exterkate (2019) Microcosm biofilms cultured from different oral niches in periodontitis patients, Journal of Oral Microbiology, 11:1

Older, Caitlin E., Diesel, Alison B., Lawhon, Sara D., Queiroz, Cintia R. R., Henker, Luan C., Rodrigues Hoffmann, Aline. “The feline cutaneous and oral microbiota are influenced by breed and environment

Jabbar-Lopez ZK, Gurung N, Greenblatt D, et al. Protocol for an outcome assessor-blinded pilot randomised controlled trial of an ion-exchange water softener for the prevention of atopic eczema in neonates, with an embedded mechanistic study: the Softened Water for Eczema Prevention (SOFTER) trial. BMJ Open 2019;9:e027168. doi:10.1136/ bmjopen-2018-027168

Vidović, B., et al. “The effect of the octenidine-based oral antiseptic on the structure of microbial communities and periodontal status in patients with fixed orthodontic treatments.” European Review for Medical and Pharmacological Sciences 23 (2019): 8598-8605.

Animal applications

4. Sequencing and Genotyping Sequencing

mtDNA study

Andrew T., Calloway C.D., Stuart S., Lee S.H., Gill R., Clement G., et al. (2011) A twin study of mitochondrial DNA polymorphisms shows that heteroplasmy at multiple sites is associated with mtDNA variant 16093 but not with zygosity. PloS One 6: e22332.


Wong, G., Wong, I., Chan, K., Hsieh, Y., and Wong, S. (2015) A Rapid and Low-Cost PCR Thermal Cycler for Low Resource Settings. PLoS One 10: e0131701.

Chan, Kamfai, et al. “A rapid and low-cost PCR thermal cycler for infectious disease diagnostics.” PloS one 11.2 (2016): e0149150.

Telomere length population studies

Asok A., Bernard K., Roth T., Rosen J., and Dozier M. (2013) Parental responsiveness moderates the association between early-life stress and reduced telomere length. Dev Psychopathol 25: 577-585.

Drury S.S., Mabile E., Brett Z.H., Esteves K., Jones E., Shirtcliff E.A., and Theall, K.P. (2014). The association of telomere length with family violence and disruption. Pediatrics, 134(1): peds-2013-3415.

Drury S. S., Shirtcliff E.A., Shachet A., Phan J., Mabile, E., Brett, Z.H., and Theall, K. P. (2014). Growing up or growing old? Cellular aging linked with testosterone reactivity to stress in youth. The American journal of the medical sciences 348(2): 92-100.

Wong L.S., Huzen J., de Boer R.A., van Gilst W.H., van Veldhuisen D.J., and van der Harst P. (2011) Telomere length of circulating leukocyte subpopulations and buccal cells in patients with ischemic heart failure and their offspring. PloS One 6: e23118.

Barha, Cindy K., et al. “Number of children and telomere length in women: a prospective, longitudinal evaluation.” PloS one 11.1 (2016): e0146424.

Humphreys, Kathryn L., et al. “Accelerated telomere shortening: Tracking the lasting impact of early institutional care at the cellular level.” Psychiatry Research 246 (2016): 95-100.

Küffer, Andreas Lorenz, et al. “Posttraumatic stress disorder, adverse childhood events, and buccal cell telomere length in elderly swiss former indentured child laborers.” Frontiers in Psychiatry 7 (2016).

RNA and Gene Expression

Bernardi J.R., Ferreira C.F., Nunes M., da Silva C.H., Bosa V.L., Silveira P.P., and Goldani M.Z. (2012) Impact of perinatal different intrauterine environments on child growth and development in the first six months of life-IVAPSA birth cohort: Rationale, design, and methods. BMC Pregnancy and Childbirth 12: 25.

Archer, Nicholas Steven, et al. “A comparison of collection techniques for gene expression analysis of human oral taste tissue.” PloS one 11.3 (2016): e0152157.

Whole Exome Sequencing

Simon C., Chagraoui J., Krosl J., Gendron P., Wilhelm B., Lemieux S., et al.(2012) A key role for EZH2 and associated genes in mouse and human adult T-cell acute leukemia. Genes Dev 26: 651-656.

Timberlake, Andrew T., et al. “Two locus inheritance of non-syndromic midline craniosynostosis via rare SMAD6 and common BMP2 alleles.” Elife 5 (2016): e20125.

Array CGH

Albertson D.G., Schmidt B.L., Bhattacharya A., and Olshen A.B. (2011) Molecular Subtyping of Oral Squamous Cell Carcinoma to Distinguish a Subtype that is Unlikely to Metastasize. U.S. Patent Application 13/812,83.

Capalbo, A., Ottolini, C.S., Griffin, D.K., Ubaldi, F.M., Handyside, A.H., and Rienzi, L. (2015) Artificial oocyte activation with calcium ionophore does not cause a widespread increase in chromosome segregation errors in the second meiotic division of the oocyte. Fertil Steril (in press).

Capalbo, Antonio, et al. “Artificial oocyte activation with calcium ionophore does not cause a widespread increase in chromosome segregation errors in the second meiotic division of the oocyte.” Fertility and sterility 105.3 (2016): 807-814.

RFLP, VNTR and STR analysis

Cirillo J., Hughes J., Ridding M., Thomas P.Q., and Semmler J.G. (2012) Differential modulation of motor cortex excitability in BDNF met allele carriers following experimentally induced and use‐dependent plasticity. Eur J Neurosci 36: 2640-2649.

Devesse, L., Syndercombe Court, D., and Cowan, D. (2015) Determining the authenticity of athlete urine in doping control by DNA analysis. Drug Test. Analysis 7: 912-18

Henst, R.H., Jaspers, R.T., Roden, L.C., and Rae, D.E. (2015) A chronotype comparison of South African and Dutch marathon runners: The role of scheduled race start times and effects on performance. Chronobiol Int 32: 858-868.

Lian, M., Rajan-Babu, I., Singh, K., Lee, C.G., Law, H., and Chong, S.S. (2015) Efficient and Highly Sensitive Screen for Myotonic Dystrophy Type 1 Using a One-Step Triplet-Primed PCR and Melting Curve Assay 17: 128-135.

Roher A.E., Debbins J.P., Malek-Ahmadi M., Chen K., Pipe J.G., Maze S., et al.(2012) Cerebral blood flow in alzheimer’s disease. Vasc Health Risk Manag 8: 599-611.

Rowles J., Karr S., Gurney M.K., Brownlow W., Garza M., and Olsen M. (2012) Description of a facile, rapid, and inexpensive method to profile for the organic cation transporter (oct1) del420 variant. Int J LifeSc Bt & Pharm Res. 1: 36-41.

Shi, Q., Wang, X.S., Li, G., Shah, N.D., Orlowski, R.Z., Williams, L.A., et al.(2015) Racial/ethnic disparities in inflammatory gene single‐nucleotide polymorphisms as predictors of a high risk for symptom burden in patients with multiple myeloma 1 year after diagnosis. Cancer 121: 1138-1146.

Van Breda, K., Collins, M., Stein, D.J., and Rauch, L. (2015) The COMT val 158 met polymorphism in ultra-endurance athletes. Physiol Behav 151: 279-283.

Wagaiyu, E.G., and Bulimo, W.D. (2014) Genetic polymorphisms in IL-1A and IL-1B isoforms and their associations with chronic periodontitis in the Swahili people of Kenya. IOSR-JDMS 13 (11): 7-15

Shawa, Nyambura, and Laura Catherine Roden. “Chronotype of South African adults is affected by solar entrainment.” Chronobiology international 33.3 (2016): 315-323.

Grass, Robert N., et al. “Genomic encryption of digital data stored in synthetic DNA.” bioRxiv (2019): 831883.

SNP typing and GWAS

Almomani B., Hawwa A.F., Millership J.S., Heaney L., Douglas I., McElnay J.C., and Shields M.D. (2013) Can certain genotypes predispose to poor asthma control in children? A pharmacogenetic study of 9 candidate genes in children with difficult asthma. PloS One 8: e60592.

Bowler F.R., Reid P.A., Boyd A.C., Diaz-Mochon J.J., and Bradley M. (2011) Dynamic chemistry for enzyme-free allele discrimination in genotyping by MALDI-TOF mass spectrometry. Analytical Methods 3: 1656-1663.

Celis-Morales, C., Livingstone, K.M., Marsaux, C.F., Forster, H., O’Donovan, C.B., Woolhead, C., et al. (2015) Design and baseline characteristics of the Food4Me study: a web-based randomised controlled trial of personalised nutrition in seven European countries. Genes & Nutrit 10: 1-13.

Celis-Morales, C., Livingstone, K.M., Woolhead, C., Forster, H., O’Donovan, C.B., Macready, A.L., et al. (2015) How reliable is internet-based self-reported identity, socio-demographic and obesity measures in European adults? Genes & Nutrit 10: 1-10.

Centanni, T., Green, J.R., Iuzzini-Seigel, J., Bartlett, C.W., and Hogan, T.P. (2015) Evidence for the multiple hits genetic theory for inherited language impairment: a case study. Front Genet 6: 272.

Centanni, T., Sanmann, J., Green, J., Iuzzini‐Seigel, J., Bartlett, C., Sanger, W., and Hogan, T. (2015) The role of candidate‐gene CNTNAP2 in childhood apraxia of speech and specific language impairment. Am. J. Med. Genet 168: 536-543.

Gosadi, I.M., Goyder, E.C., and Teare, M.D. (2014) Investigating the potential effect of consanguinity on type 2 diabetes susceptibility in a Saudi population. Hum Hered 77: 197-206.

Freeman J.C. (2013) Single nucleotide polymorphisms linked to essential hypertension in kasigau, Kenya.

Harker, M., Carvell, A., Marti, V.P., Riazanskaia, S., Kelso, H., Taylor, D., et al.(2014) Functional characterisation of a SNP in the ABCC11 allele—effects on axillary skin metabolism, odour generation and associated behaviours. J Dermatol Sci 73: 23-30.

Jilani, M., Mohamed, A.A., Zeglam, H.B., Alhudiri, I.M., Ramadan, A.M., Saleh, S.S., et al. (2015) Association between vitamin D receptor gene polymorphisms and chronic periodontitis among Libyans. Libyan J of Med 10: 1.

Johnson L. W. (2014) Factors influencing recovery from mild traumatic brain injury.

Krueger F., Parasuraman R., Iyengar V., Thornburg M., Weel J., Lin M., et al.(2012) Oxytocin receptor genetic variation promotes human trust behavior. Front Hum Neurosci 6: 4.

Lancaster T., Linden D., and Heerey E. (2012) COMT val158met predicts reward responsiveness in humans. Genes, Brain and Behavior 11: 986-992.

Marsaux, C.F., Celis-Morales, C., Fallaize, R., Macready, A.L., Kolossa, S., Woolhead, C., et al. (2015) Effects of a Web-Based Personalized Intervention on Physical Activity in European Adults: A Randomized Controlled Trial. Journal of medical Internet research 17: e231.

McDonnell M.N., Buckley J.D., Opie G.M., Ridding M.C., and Semmler J.G. (2013) A single bout of aerobic exercise promotes motor cortical neuroplasticity. J Appl Physiol (1985) 114: 1174-1182.

McMichael G.L., Gibson C.S., O’Callaghan M.E., Goldwater P.N., Dekker G.A., Haan E.A., et al. (2009) DNA from buccal swabs suitable for high-throughput SNP multiplex analysis. J Biomol Tech 20: 232-235.

Miller, L., Sajdler, C., and Chauhan, N. (2015) The impact of chronic pain in patients on the acute pain service British Journal of Pain 9: 5-75.

Morgan, A.R., Han, D Y., Wickens, K., Barthow, C., Mitchell, E.A., Stanley, T.V. et al. (2014) Differential modification of genetic susceptibility to childhood eczema by two probiotics. Clinical & Experimental Allergy 44(10): 1255-1265

Ottolini, C.S., Newnham, L.J., Capalbo, A., Natesan, S.A., Joshi, H.A., Cimadomo, D., et al. (2015) Genome-wide maps of recombination and chromosome segregation in human oocytes and embryos show selection for maternal recombination rates. Nat Genet (in press).

Paladino T., Mendoza E., Jin Y., Stoerker J., Dobb M., Farkas D., Oeth P. (2011) Evaluation Of Buccal Swabs As Source Of DNA For Multiplexed Genotyping Of AMD Associated Markers. ARVO 2011. http://www.abstractsonline.com/Plan/ViewAbstract.aspx?sKey=7de7e149-869f-4f57-b973-50ae74ccda44&cKey=e9fc6bc6-6ab3-4c8a-93cf-6c23e88e01b2&mKey=6f224a2d-af6a-4533-8bbb-6a8d7b26edb3

Phillips, S.L., Richter, S.J., Teglas, S.L., Bhatt, I.S., Morehouse, R.C., Hauser, E.R., and Henrich, V.C. (2015) Feasibility of a bilateral 4000–6000 Hz notch as a phenotype for genetic association analysis1-8. Int J Audiol 19: 1-8.

Reavis, E.A., Frank, S.M., and Peter, U.T. (2015) Caudate nucleus reactivity predicts perceptual learning rate for visual feature conjunctions. Neuroimage110: 171-181.

Schoffelen, T., Ammerdorffer, A., Hagenaars, J.C., Bleeker-Rovers, C.P., Wegdam-Blans, M.C., Wever, P.C., et al. (2015) Genetic Variation in Pattern Recognition Receptors and Adaptor Proteins Associated With Development of Chronic Q Fever. J Infect Dis 212: 818-829.

Shoeb, D., Dearden, J., Weatherall, A., Bargery, C., Moreea, S., Alam, S., et al.(2014) Extended duration therapy with pegylated interferon and ribavirin for patients with genotype 3 hepatitis C and advanced fibrosis: final results from the STEPS trial. J Hepatol 60: 699-705.

Startin, C.M., Fiorentini, C., de Haan, M., and Skuse, D.H. (2015) Variation in the X-Linked EFHC2 Gene Is Associated with Social Cognitive Abilities in Males. PLoS One 10: e0131604.

Valdes A.M., Arden N.K., Vaughn F.L., Doherty S.A., Leaverton P.E., Zhang W., et al. (2011) Role of the Nav1. 7 R1150W amino acid change in susceptibility to symptomatic knee osteoarthritis and multiple regional pain. Arthritis Care & Research 63: 440-444.

Ammerdorffer, Anne, et al. “Genetic variation in TLR10 is not associated with chronic Q fever, despite the inhibitory effect of TLR10 on Coxiella burnetii-induced cytokines in vitro.” Cytokine 77 (2016): 196-202.

De Waal, Margaretha. ASMT gene polymorphisms are associated with Autism Spectrum Disorder (ASD) symptom severity in a South African population. Diss. University of Cape Town, 2016.

Wachman, Elisha M., et al. “Association of maternal and infant variants in PNOC and COMT genes with neonatal abstinence syndrome severity.” The American Journal on Addictions 26.1 (2017): 42-49.

Gilbert-Diamond, Diane, et al. “Television food advertisement exposure and FTO rs9939609 genotype in relation to excess consumption in children.” International Journal of Obesity (2016).

Li, Katherine, et al. “HLA-C* 06: 02 allele and response to IL-12/23 inhibition: results from the ustekinumab phase 3 psoriasis program.” Journal of Investigative Dermatology 136.12 (2016): 2364-2371.

O’Donovan, Clare B., et al. “The impact of MTHFR 677C→ T risk knowledge on changes in folate intake: findings from the Food4Me study.” Genes & Nutrition 11.1 (2016): 25.

Livingstone, Katherine M., et al. “Weekday sunlight exposure, but not vitamin D intake, influences the association between vitamin D receptor genotype and circulating concentration 25‐hydroxyvitamin D in a pan‐European population: the Food4Me study.” Molecular nutrition & food research 61.2 (2017).

Livingstone, Katherine M., et al. “Characteristics of European adults who dropped out from the Food4Me Internet-based personalised nutrition intervention.” Public health nutrition 20.1 (2017): 53-63.

McCarty, Matt, and Keqin Gregg. “Methods of detecting synthetic urine and matching a urine sample to a subject.” U.S. Patent Application No. 14/752,511.

Fallaize, Rosalind, et al. “The effect of the apolipoprotein E genotype on response to personalized dietary advice intervention: findings from the Food4Me randomized controlled trial.” The American journal of clinical nutrition 104.3 (2016): 827-836.

Huang, Wei-Hsin, et al. “Study of seven single-nucleotide polymorphisms identified in East Asians for association with obesity in a Taiwanese population.” BMJ open 6.8 (2016): e011713.

Livingstone, Katherine M., et al. “Fat mass-and obesity-associated genotype, dietary intakes and anthropometric measures in European adults: the Food4Me study.” British Journal of Nutrition 115.03 (2016): 440-448.

Barash, Mark, Philipp E. Bayer, and Angela van Daal. “Candidate gene scan for Single Nucleotide Polymorphisms involved in the determination of normal variability in human craniofacial morphology.” bioRxiv (2016): 060814.

Runge, Christina L., et al. “Association of TMTC2 with human nonsyndromic sensorineural hearing loss.” JAMA Otolaryngology–Head & Neck Surgery 142.9 (2016): 866-872.

Chiu, Christine L., Nerissa L. Hearn, and Joanne M. Lind. “Development of a Risk Score for Extraintestinal Manifestations of Coeliac Disease.” Medicine 95.15 (2016).

Jones, N., et al. “A genetic-based algorithm for personalized resistance training.” Biology of sport 33.2 (2016): 117.

Tovar, Alison, et al. “An FTO Gene Variant Moderates the Association between Parental Restriction and Child BMI.” PloS one 11.5 (2016): e0155521.

Celis‐Morales, Carlos, et al. “Physical activity attenuates the effect of the FTO genotype on obesity traits in European adults: The Food4Me study.” Obesity (2016).

Marsaux, Cyril FM, et al. “Changes in physical activity following a genetic-based internet-delivered personalized intervention: randomized controlled trial (Food4Me).” Journal of medical Internet research 18.2 (2016).

ŠIMONEK, JAROMÍR, and RADOSLAV ŽIDEK. “Sports talent identification based on motor tests and genetic analysis.” Trends in Sport Sciences25.4 (2018)

Sequencing (Sanger, next gen, pyrosequencing)

Dawson P.A., Sim P., Mudge D.W., and Cowley D. (2013) Human SLC26A1 gene variants: A pilot study. The Scientific World Journal 2013: ID 541710.

Duc T.T.T., Farnir F., Michaux C., Desmecht D., and Cornet A. (2012) Detection of new biallelic polymorphisms in the human MxA gene. Mol Biol Rep 39: 8533-8538.

El-Kordi A., Kästner A., Grube S., Klugmann M., Begemann M., Sperling S., et al.(2013) A single gene defect causing claustrophobia. Translational Psychiatry 3: e254.

Gale G., Östman S., Rekabdar E., Naluai Å.T., Högkil K., Hasséus B., et al. (2015) Characterisation of a swedish cohort with orofacial granulomatosis with or without Crohn’s disease. Oral diseases 21 (1): e98-e104.

Harker M., Carvell A., Marti V.P., Riazanskaia S., Kelso H., Taylor D., et al.(2014) Functional characterisation of a SNP in the ABCC11 allele—Effects on axillary skin metabolism, odour generation and associated behaviours. J Dermatol Sci 73: 23-30.

Polcari, I., Becker, L., Stein, S. L., Smith, M. S., & Paller, A. S. (2014). Filaggrin Gene Mutations in African Americans with Both Ichthyosis Vulgaris and Atopic Dermatitis. Pediatric dermatology 31 (4): 489-492.

Porter T.R., Li X., Stephensen C.B., Mulligan K., Rutledge B., Flynn P.M., et al.(2013) Genetic associations with 25-hydroxyvitamin D deficiency in HIV-1-infected youth: Fine-mapping for the GC/DBP gene that encodes the vitamin D-binding protein. Frontiers in Genetics 4: 234.

Schmidt B.L., Kuczynski, J., Bhattacharya A., Huey B. Corby, P. M. Queiroz, et al.(2014). Changes in Abundance of Oral Microbiota Associated with Oral Cancer. PLoS One, 9(6): e98741.

Schroeder K.B., McElreath R., and Nettle D. (2013) Variants at serotonin transporter and 2A receptor genes predict cooperative behavior differentially according to presence of punishment. Proc Natl Acad Sci U S A 110: 3955-3960.

Stephensen C.B., Armstrong P., Newman J.W., Pedersen T.L., Legault J., Schuster G.U., et al. (2011) ALOX5 gene variants affect eicosanoid production and response to fish oil supplementation. J Lipid Res 52: 991-1003.

Schultz J.M., Bhatti R., Madeo A.C., Turriff A., Muskett J.A., Zalewski C.K., et al. (2011) Allelic hierarchy of CDH23 mutations causing non-syndromic deafness DFNB12 or usher syndrome USH1D in compound heterozygotes. J Med Genet 48: 767-775.

Smith K.E., Porges E.C., Norman G.J., Connelly J.J., and Decety J. (2014) Oxytocin receptor gene variation predicts empathic concern and autonomic arousal while perceiving harm to others. Social Neuroscience 9: 1-9.

Topka, S., Vijai, J., Walsh, M.F., Jacobs, L., Maria, A., Villano, D., et al. (2015) Germline ETV6 mutations confer susceptibility to acute lymphoblastic leukemia and thrombocytopenia. PLoS Gen 11: e1005262.

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